name.to_list() # find substrate to evader transforms: sub_to_evader_transforms = efflux_mmpa_index[(efflux_mmpa_index['compound_structure_B'].isin(efflux_evaders_om_corrected.SMILES)) & (efflux_mmpa_index['compound_structure_A'].isin(efflux_substrates_om_corrected.SMILES))] len(sub_to_...
The solution is to convert it back to a list whose values are Python primitives. defsquare_array_right(x):returnnp.square(x).tolist()spark_square_array_right=udf(square_array_right,ArrayType(IntegerType())) Now the UDF works as intended: zz=df_np.withColumn('squared',spark_square_array...
Organismal physiology is widely regulated by the molecular circadian clock, a feedback loop composed of protein complexes whose members are enriched in intrinsically disordered regions. These regions can mediate protein-protein interactions via SLiMs, but the contribution of these disordered regions to clo...
vector = np.array(list(map(float, line[-300:])), dtype=np.float) # [300] vocab[line[0]] = vector vocab['<unk>'] = np.random.rand(dimension) print(f'[!] load word embedding from {path}') with open(exist_, 'wb') as f: pickle.dump(vocab, f) return vocab def sent2glove...
Cellular activities are commonly associated with dynamic proteomic changes at the subcellular level. Although several techniques are available to quantify whole-cell protein turnover dynamics, such measurements often lack sufficient spatial resolution at
We sought a multiple alignment that would yield a unified coordinate system across the database, where a DNA base (or amino acid residue) in one HTH-DNA Table 3 List of final set of structures in database. Some PDB files contain multiple non-redundant HTH domains which were treated as ...
These anchors subdivide the genome into syntenic clusters forming the connected components of the graph of candidates Γ c , here shown for blocks of a genome-wide alignment as delimiters. Each cluster forms a connected component of Γ c . Pairwise generalized list alignments leads to an ...
Data were exported as text files, converted to lists with the program FP2list, and evaluated with Spotfire (Spotfire, Inc., Somerville, MA). ELISA-Based Assay All hits from the fluorescence polarization assay were analyzed with an ELISA assay, which measures the amounts of glycosylated RNaseB...
Neighbourhood methods in StellarGraph class (neighbors, in_nodes, out_nodes) now return a list of neighbours instead of a set. This addresses #653. This means multi-edges are no longer collapsed into one in the return value. There will be an implicit change in behaviour for explorer classes...
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