Citation If you use TreeWAS in your work, please cite us: Cortes A., et al. (2017) Bayesian analysis of genetic association across tree-structured routine healthcare data in the UK Biobank. bioRxiv 105122. doi: https://doi.org/10.1101/105122About...
Microsatellite data analysis To identify the GP composition of the sample, we used the Bayesian clustering method implemented in STRUCTURE 2.2 (Pritchard et al., 2000). We ran an admixture model with correlated allele frequencies between clusters. Ten runs were performed for each number of clusters...
Approximate Bayesian Computation detected recent bottlenecks approximately dated to the last glacial maximum in Benin, West Cameroon and S茫o Tom茅, and an older bottleneck in South Cameroon and Gabon, suggesting a genetic effect of Pleistocene cycles of forest contraction. CpDNA haplotype distribution ...
Examples of subtype B transmission clusters (TCs) with TDR: A maximum likelihood (ML) tree per subtype was constructed, and TCs were confirmed by Bayesian Phylogenetic analyses.AndreaClemencia, PinedaPeña