Transcriptome in vivo analysis (TIVA)of spatially defined single cells in live tissue. Lovatt D,Ruble BK,Lee J,Dueck H,Kim TK,Fisher S,Francis C,Spaethling JM,Wolf JA,Grady MS,Ulyanova AV,Yeldel SB,Griepenburg JC,Buckley TP,Kim J,Sul JY,Dmochowski IJ,Eberwine J. Nat Methods . ...
Transcriptome In Vivo Analysis 优质文献 相似文献 参考文献 引证文献Global comparative transcriptome analysis of cartilage formation in vivo (2009). Global comparative transcriptome analysis of cartilage formation in vivo. BMC Dev Biol 9:20.Cameron, T.L.; Belluoccio, D.; Farlie, P.G.;... ...
18. The resulting cell types of interest may be further analysed by PIC to obtain expression profiles at much higher depth. Transcriptome in vivo analysis (TIVA) is an alternative to PIC if targeting living cells46. PIC can also detect spatially heterogeneous cells in tissues that appear to be...
detail study of pathways involved in cell death is essential to gain insights into pathogenicity of the disease and can pave the way to identify the possibilities of treating the disease. KEGG analysis revealed that MAPK signaling pathway, NF-kappa B signaling pathway, p53 ...
Global analysis of the human gastric epithelial transcriptome altered by Helicobacter pylori eradication in vivo 喜欢 0 阅读量: 42 作者:MB Resnick,E Sabo,PA Meitner,SS Kim,Y Cho,HK Kim,R Tavares,SF Moss 摘要: The transcriptional profile of gastric epithelial cell lines cocultured with ...
transcriptomeThis review is devoted to the state-of-the-art strategies for the in vivo whole-transcriptome analysis of intracellular pathogens. The methods for the initial enrichment with bacterial RNA are discussed in detail, including the hybridization-based approaches, as well as the methods for ...
A recent method, PAR-CLIP, uses photoreactive nucleosides to crosslink RBPs to target RNAs in cells prior to immunoprecipitation. Here, we establish iPAR-CLIP (in vivo PAR-CLIP) to determine, at nucleotide resolution, transcriptome-wide binding sites of GLD-1, a conserved, germline-specific ...
Global analysis of transcription factors expressed at each stage revealed that the majority are expressed in all four lineages, although their expression levels or timing may vary between them. For example,Otx1is unique to the endodermal lineage at stage 10 but to the neural lineage at stage 13...
Consistent with the above analysis, when heatmaps of the highly translated genes at the GV and MII stages were generated, both the transcription and translation levels were higher in the GV stage than in the MII stage. However, the heatmaps of the MII-enriched genes showed a markedly higher...
Functional enrichment analysis of the DEGs The regulation network differences for theSLCO1B3between the IM+ and IM− hens were investigated. We performed a functional enrichment analysis of the DEGs using DAVAID 6.8 online software. The DEGs were significantly enriched in the pathways, including...