PlnTFDB is a publicly available computational resource comprising putative complete sets of transcription factors from plants. The original database listed the putative complete sets of TFs from five different green plant (viridiplantae) species. Up to date, summer 2007, PlnTFDB have had more than ...
We developed a comprehensive plant transcription factor database PlantTFDB (http://planttfdb.cbi.pku.edu.cn), which contains 26 402 TFs predicted from 22 species, including five model organisms with available whole genome sequence and 17 plants with available EST sequences. To provide comprehensive...
PlnTFDB is an integrative plant transcription factor database that provides a web interface to access large (close to complete) sets of transcription factors of several plant species, currently encompassing Arabidopsis thaliana (thale cress), Populus trichocarpa (poplar), Oryza sativa (rice), ...
resourcesforstudyingthefunctionandevolutionoftranscriptionfactors.WedevelopedacomprehensiveplanttranscriptionfactordatabasePlantTFDB(http://planttfdb.cbi.pku.edu),whichcontains26402TFspredictedfrom22species,includingfivemodelorganismswithavailablewholegenomesequenceand17plantswithavailableESTsequences.Toprovidecomprehensive...
Functions and Application of the AP2/ERF Transcription Factor Family in Crop Improvement Plants have acquired sophisticated stress response systems to adapt to changing environments.It is important to understand plants' stress response mechanis... Zhao-Shi,Xu,Ming,... - 《Journal of Integrative Plant...
Molecular switching in transcription through splicing and proline-isomerization regulates stress responses in plants Transcription factor DREB2A interacts with Med25 to regulate stress responses. Here, the authors show that DREB2A uses splicing and proline-isomerization for this regulation and that proli...
In addition, GmWRKY13-transgenic plants showed an increase in lateral roots. These results indicate that the three GmWRKY genes play differential roles in abiotic stress tolerance, and that GmWRKY13 may function in both lateral root development and the abiotic stress response. 展开 ...
2.9. Update of transcription factor (TF) annotations in Williams 82 reference genome version 4 The iTAK TF annotation pipeline [31] was used for W82 genome (v4) TF annotation. The new annotation of TFs was then integrated into the version 2 TF database from PlantTFDB database [27]. 2.10...
Characterization of the genomic distances over which transcription factor (TF) binding influences gene expression is important for inferring target genes from TF chromatin immunoprecipitation followed by sequencing (ChIP-seq) data. Here we systematically examine the relationship between thousands of TF and ...
G. CRISPR/Cas9-based multiplex genome editing in monocot and dicot plants. Curr. Protoc. Mol. Biol. 115, 31.6.1–31.6.21 (2016). Article Google Scholar Liu, X. Q., Bai, X. Q., Wang, X. J. & Chu, C. C. OsWRKY71, a rice transcription factor, is involved in rice defense ...