comparative genome analysisJavaVisualization of data is important for many data-rich disciplines. In biology, where data sets are becoming larger and more complex, graphical analysis is felt to be ever more pertinent. Although some patterns and trends in data sets may only be determined by ...
bedtools: flexible tools for genome arithmetic and DNA sequence analysis. usage: bedtools <subcommand> [options] The bedtools sub-commands include: [ Genome arithmetic ] intersect Find overlapping intervals in various ways. 求区域之间的交集,可以用来注释peak,计算reads比对到的基因组区域 不同样品的pea...
There are three options for defining the windows to be analysed, using the --windType argument. Wndow TypeDescription coordinate Windows will cover a fixed range in the genome, which is defined as the window size. If there is missing data, this can lead to variable numbers of sites used ...
Bioinformatics for personal genome interpretation. An international consortium released the first draft sequence of the human genome 10 years ago. Although the analysis of this data has suggested the geneti... C Emidio,NL Nehrt,MG Kann,... - 《Briefings in Bioinformatics》 被引量: 109发表: 20...
Tools for analyzing DNA methylation data. Contribute to smithlabcode/dnmtools development by creating an account on GitHub.
bedtools: flexible tools for genome arithmetic and DNA sequence analysis. usage: bedtools <subcommand> [options] The bedtools sub-commands include: [ Genome arithmetic ] intersect Find overlapping intervals in various ways. 求区域之间的交集,可以用来注释peak,计算reads比对到的基因组区域 ...
MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis Background: The study of microbiomes using whole-metagenome shotgun sequencing enables the analysis of uncultivated microbial populations that may have imp... GV Uritskiy,DR Jocelyne,T James - 《Microbiome》 被引量: 9发表:...
BioLegend is committed to supporting SARS- CoV-2 research. Discover our reagents to characterize virus-induced inflammation, monitor cellular response, analyze anti-viral pathways, and for biomarker discovery and monitoring.
Genome-scale metabolic networks and transcriptomic data represent complementary sources of knowledge about an organism metabolism. We propose here a method for gene set enrichment analysis, metaboGSE, to interpret transcriptomic data wit... VDT Tran,S Moretti,AT Coste,... - 《Biorxiv》 被引量: ...
UCSC BLAT is a web server for searching the query sequence ( can be multiple sequences ) to find its location in the genome. 2.3.6HMMERSearch The HMMER Search program is a sequence search tool that is both fast and responsive. It enables the use of profile hidden Markov models for sequen...