同期背靠背的另外一篇文章，则来自巴西Universidade de São Paulo的Lázaro Eustáquio Pereira Peres课题组题为“De novo domestication of wild tomato using genome editing”的研究论文。该论文同样通过使用CRISPR-Cas9基因编辑技术，调控与形态学，花和果实生产以及抗坏血酸合成相关的基因的上游开放阅读框，将四种理想...
The genome of the inbred tomato cultivar ‘Heinz 1706’ was sequenced and assembled using a combination of Sanger and ‘next generation’ technologies (Supplementary Information section 1). The predicted genome size is approximately 900 megabases (Mb), consistent with previous estimates3, of which ...
Tomato was consequently chosen as a target for genome sequencing. S. lycopersicum has a diploid genome of simple architecture that is approximately 900 Mb in size and is distributed across 12 chromosomes (Michaelson et al. 1991). Many Solanaceae species have highly syntenic genomes, each also ...
on tomato has been accumulated. Recently, the number of tomato genome sequences in the International Nucleotide Sequence Databases has been rapidly increasing due to the progress of the international tomato genome sequencing project. Here, we summarize the current status of tomato genetic and genomic ...
L. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat. Biotechnol. 37, 907–915 (2019). Article CAS PubMed PubMed Central Google Scholar Anders, S., Pyl, P. T. & Huber, W. HTSeq—a Python framework to work with high-throughput sequencing data. ...
In order to discover SNPs and analyze the distribution of polymorphisms in the tomato genome, we have re-sequenced the whole genomes of eight lines corresponding to the smallest core collection composed of four cherry-type and four cultivated accessions. The genome sequences were then aligned to ...
Tomato Genome Consortium: The tomato genome sequence provides insights into fleshy fruit evolution. Nature. 2012, 485: 635-641. 10.1038/nature11119. Article Google Scholar Kramer EM, Dorit RL, Irish VF: Molecular evolution of genes controlling petal and stamen development: duplication and divergenc...
This study provides the first comprehensive analysis of GRAS gene family in the tomato genome. The data will undoubtedly be useful for better understanding the potential functions of GRAS genes, and their possible roles in mediating hormone cross-talk and abiotic stress in tomato as well as in so...
Integration and graphical presentation of important genomic information will facilitate better and easier use of tomato genome. TGRD can be accessed as an open source repository at http://59.163.192.91/tomato2/. 展开 关键词: Lycopersicon esculentum MicroRNAs DNA, Plant Genome, Plant Databases, ...
We present a tomato pan-genome constructed using genome sequences of 725 phylogenetically and geographically representative accessions, revealing 4,873 genes absent from the reference genome. Presence/absence variation analyses reveal substantial gene loss and intense negative selection of genes and ...