For example, if we say that an algorithm has a time complexity of O(n), it means that the algorithm’s execution time increases linearly with the size of the input. If the input size doubles, the time it takes to run the algorithm will roughly double as well. If an algorithm is O(...
In comparison, each of the genome assemblies generated by the Flye and Shasta algorithms has higher base-pair accuracy (Supplementary Tables 1–3, 6). In the Merqury spectra-cn plots, we observe that GoldRush has a greater number of unique k-mers not found in the high-quality short reads...
By contrast, most methods in the literature have a complexity of O(N2) because they require the comparison of all N streamlines in the tractography dataset between them. These methods require much more time than our method to cluster any dataset; consequently, we chose the QB method for ...
In this study, we propose a method for quantifying the complexity of graph structures obtained from chaotic time series data based on Campanharo's method. Our results show that it is possible to quantify periodic, quasi -periodic, and chaotic states from the graph structure, and that numerical...
We have attempted more complicated measures such as MSM [52] and TWED [31]. They are very time-consuming because they have at least quadratic time complexity, and neither of them (using the Python implementations from sktime [30]) could complete the run within the 2-day time frame for an...
This graph is horizontally symmetrical, indicating the two complementary haplotypes in a diploid genome. a The competitive edges (dashed arrows) at the same SNP position are removed since they have very shallow depth in comparison with the dominate path. b The short tip is deleted if the length...
Experiment 1: Optimizations comparison. We have first evaluated strate- gies that aims to reduce the space complexity of CPT (cf. Section 3) by measuring the compression rate and the amount of time spent for training. Other measures such as prediction time, coverage and accuracy are not ...
In Section 4, a comparison of clustering methods is presented in the form of the experimental evaluation. Finally, Section 5 presents our conclusions. Access through your organization Check access to the full text by signing in through your organization. Access through your organization ...
g. The second part assignsmnodes outside the shortest path to theknodes on the shortest path between the start and end nodes. The time complexity of this part is\(\mathcal {O}(km)\), which equals\(\mathcal {O}((N-k)k)\). Hence, the total time complexity of our algorithm is ...
We also remark that bounding the degree of variables is not the only possible structural restriction: many attempts at establishing structurally based complexity results are based on the tree-width (or other width parameters) of some graph representation of the constraints, cf. [11], [14]. A ...