In bacterial systems, the process of transcription is carried out by a single multi-subunit complex, called simply RNA polymerase. Specificity can be achieved by the differential utilization of several sigma factors (Losick & Pero, 1981), as well as activators and repressors. In eukaryotes, ...
The general structure of retroviruses andLTRretrotransposons are similar59. SeveralLTRretrotransposons have similar open reading frames (ORFs) to those of retroviruses, consisting of thegagandpol(pro) genes and, in some cases,envand other accessory genes. The main difference between retroviruses andLTR...
aspects of gene expression regulation, including the prediction of promoter motifs as tentative binding sites for transcription factors, in the stem/germinal and tegumental cell populations. This study contributes to the expansion of the currently scarce number single cell datasets for schistosomes5and re...
Intact single nuclei are emulsified with gel beads containing barcoded oligonucleotides within a microfluidic chamber, resulting in a barcoded cDNA library after reverse transcription. b, The UMAP coordinates of 16,890 M. truncatula nuclei from three AM-colonized root harvest timepoints clustered by ...
Genome Biology 2012, 13:R24 http://genomebiology.com/2012/13/3/R24 SOFTWARE Open Access The Transcription Factor Encyclopedia Dimas Yusuf1, Stefanie L Butland1, Magdalena I Swanson2, Eugene Bolotin3, Amy Ticoll4, Warren A Cheung5, Xiao Yu Cindy Zhang1, Christopher TD Dickman6, Debra L ...
Further analysis of the expression patterns of the entire anthocyanin biosynthesis pathway genes indicated that almost all of the structural genes from the major steps of the anthocyanin biosynthesis pathway were upregulated during postharvest storage by SD-treatment (Fig. 6A and B). This included thr...
This way the dynamics of the transcription process could be recorded in the methylation profile of a given mRNA, which, in turn, could further impact multiple steps of mRNA biology. STAR★Methods Key Resources Table REAGENT or RESOURCESOURCEIDENTIFIER Antibodies Anti-c-Myc (1:1000) Cell ...
Ubiquitin–proteasome system (UPS) is the main protein degradation pathway, responsible for 80–90% of protein degradation in cells [49]. The UPS pathway involves two steps: first, misfolded or damaged proteins are labeled with multiple ubiquitin molecules, and then the labeled proteins are degrade...
Data were downloaded from GEO and the processing steps to find the differentially expressed genes were performed. This was followed by downstream analysis to interpret the results. (B) PCA plots of the raw data before any processing. (C) Batch corrected, after removing the platform sequencing ...
The plant shoot apical meristem holds a stem cell niche from which all aerial organs originate. Using a computational approach we show that a mixture of monomers and heterodimers of the transcription factors WUSCHEL and HAIRY MERISTEM is sufficient to pa