The Percolator algorithm was applied to the Sequest HT results. The peptide false discovery rate was set to 1% and the protein false discovery rate was set to around 5%. TMT reporter ions of the MS3 spectra were integrated with a 20 ppm tolerance and the reporter ion intensities were used ...
Finally, we compare the results from applying these procedures with naive measures of association (χ2 and reporting odds ratio) and with each other. Results and Conclusions We found semantic vector-based search to be superior to string-based search at reducing confounding bias. However, the ...
In section 6 we briefly explained the algorithm we used to solve for the first subleading correction. In section 7 and section 8 we have derived and presented the first subleading correction to the metric and the equation governing the dual membrane and the velocity field. Then in section 9...