Gene enrichment results carried out using the Gene Ontology (GO) enrichment analysis web-based bioinformatics tool WEB-based GEne SeT AnaLysis Toolkit (WebGestalt).Allione, AlessandraMarcon, FrancescaFiorito, GiovanniGuarrera, Simone...
The gene ontology (GO) enrichment analysis identified significantly enriched GO terms (p < 0.05) involved in various biological processes (56 GO terms), molecular functions (57 GO terms), and cellular components (55 GO terms). For example, 100% and about 82.5% of StSET genes were predi...
This paper addresses these using an informational theoretic approach encoded in the GO Partition Database that guarantees to maximize information for gene enrichment analysis. The GO Partition Database was designed to feature ontology partitions with GO terms of similar specificity. The GO partitions ...
The Gene Ontology (GO) and KEGG enrichment analyses of the DEGs were conducted (corrected P < 0.05) using the TBtools software [24]. All analyses were performed using three biological replicates per sample. A weighted gene co-expression network analysis (WGCNA) was conducted using the R-...
The Gene Ontology (GO) (http://www.geneontology.org/) contains a set of terms for describing the activity and actions of gene products across all kingdoms of life. Each of these activities is executed in a location within a cell or in the vicinity of a cell. In order to capture this...
Gene ontology (GO) enrichment analysis of DEGs Out of the 2333 DEGs initially identified, 1345 with complete CDS were used for the Gene Ontology (GO) analysis with 435, 699 and 752 sequences grouped in three main categories of cellular components (GO:0005575), biological processes (GO:0008150...
Gene-category enrichment analysis (GCEA) is a common method to identify functional gene categories that drive these associations, using gene-to-category annotation systems like the Gene Ontology (GO). Here, we show that applying standard GCEA methodology to spatial transcriptomic data is affected by...
Gene Ontology (GO) enrichment analysis found that the genes mainly enriched at the starting point of the pseudo-time trajectory included “auxin efflux”, “auxin polar transport”, and “auxin transmembrane transporter activity” (Fig. 5e). The auxin transport-related genes WAT1 (Ghir_D06G000...
Gene discovery in an invasive tephritid model pest species, the Mediterranean fruit fly, Ceratitis capitata Each medfly assembled sequence and singlet was assigned a gene ontology (GO) classification based the annotation of the A summary of the allocation of ... LM Gomulski,G Dimopoulos,Z Xi,...
The bubble colour indicates the p-value as generated by Singular Enrichment Analysis of the Gene Ontology (GO) terms obtained from the web-tool agriGO (http://bioinfo.cau.edu.cn/agriGO/analysis.php). The gene IDs that resulted by blasting the ESTs against (A) Arabidopsis and (B) Poplar ...