This is find for CSI indexes as they're BGZF compressed and we write an EOF block. For uncompressed BAI indexes, we instead use an ugly hack of keeping the last few bytes back until we want to close the file. This is horrible, but I can't think of a better way to get the result...
The file formats currently supported are: BAM (Binary Alignment/Map) SAM (Sequence Alignment/Map) CRAM FASTQ FASTA (input only) QSEQ VCF (Variant Call Format) BCF (Binary VCF) (output is always BGZF-compressed) For a longer high-level description of Hadoop-BAM, refer to the article "Hadoo...
Here are explanations for these warnings: • gpg: no ultimately trusted keys found: This means that the specific key is not "ultimately trusted" by you or your web of trust, which is okay for the purposes of verifying file signatures. • WARNING: This key is not certified with a ...
Here are explanations for these warnings: • gpg: no ultimately trusted keys found: This means that the specific key is not "ultimately trusted" by you or your web of trust, which is okay for the purposes of verifying file signatures. • WARNING: This key is not certified with a ...
Compressed BCF (b) Uncompressed BCF (u) Compressed VCF (z) Uncompressed VCF (v). Download and unzip. wget --quiet https://davetang.org/file/ALL.chr1.phase3_shapeit2_mvncall_integrated_v5_related_samples.20130502.genotypes.vcf.gz -O eg/1kgp.vcf.gz gunzip eg/1kgp.vcf.gz VCF to comp...
So cppip knows that packet number 3,473,920 is the closest antecedent neighbor that it knows the address for to the desired starting packet of 3,480,123. Cppip indexes directly into pcap.gz: Using the BGZF offset obtained from the index file query, cppip will directly seek to that ...
Here are explanations for these warnings: • gpg: no ultimately trusted keys found: This means that the specific key is not "ultimately trusted" by you or your web of trust, which is okay for the purposes of verifying file signatures. • WARNING: This key is not certified with a ...
Here are explanations for these warnings: • gpg: no ultimately trusted keys found: This means that the specific key is not "ultimately trusted" by you or your web of trust, which is okay for the purposes of verifying file signatures. • WARNING: This key is not certified with a ...