previous sequencing reads were too short to resolve the order of repetitive sequences, because the repeats were longer than an individual read, or sequence variations between two tandem copies were not of sufficient length to distinguish them. A recent platform with long reads...
While it is difficult to explain the peptide substrate specificity based on sequence or other chemical properties, it is notable that the same peptides degraded by SapA were also the most readily degraded by HrrP33. NCR peptide degradation is likely not a universal property of metallopeptidases, ...
Although it is possible that extension of the ASDE sequence on the 3′ side of its RNaseH sequence might eventually reveal IN and env sequences, the 5′ side of the RT sequence contains neither PR or IN sequences. This information, together with the fact that putative ORF 4 to 7 could...
could not be corrected | ├── all.unique.sscs.sorted.bam SSCS + SC + remaining (uncorrected) singletons ├── dcs │ ├── dcs.sorted.bam Duplex Consensus Sequence (DCS) │ ├── sscs.singleton.sorted.bam SSCSs that could not form DCSs as complementary strand was missing ├── ...
The primary intended use case for htseq-count is differential expression analysis, where one compares the expression of the same gene across samples and not the expression of different genes within a sample. Now, consider two genes, which share a stretch of common sequence such that for a read...
Thus, in a genome with a length of 30 kb, the approximate size of the SARS-CoV-2 genome, there are ~ 30,000 k-mers. If all viral genomes had the same sequence, this number would not change. The length of the k-mer sequences was another important variable that we considered...
Test a code to see if it is a valid sequence Test a code to see if it is a valid full code (not all valid sequences are valid full codes) Encode a latitude and longitude to a standard accuracy (14 meter by 14 meter) code
Previous work suggests that interactions between the α subunit and intracellular proteins may be a determinant of GABAAR localization (Mukherjee et al., 2011, Tretter et al., 2008, Tretter and Moss, 2008). Although the sequences of α subunits are largely homologous, there is a significant ...
PR-Set7 was found to be highly specific for nucleosomes, as no activity could be demonstrated when histones were used as a substrate Figure 1, Figure 2. This lack of activity on nonnucleosomal histones is not likely to be due to the absence of the Pre- and Post-SET domains, because ...
Informally speaking, to calculate the entropy rate of a stochastic process, the probabilities of all possible sequences produced by that process have to be taken into account. It goes without saying that this does not invalidate the utility of any established criteria of structural complexity, ...