other_dx可能包含有关患者其他诊断或合并症的信息。这个字段通常用于记录除了主要研究癌症之外的其他临床诊...
bcr_patient_barcode additional_studies tumor_tissue_site tumor_tissue_site_other other_dx gender 1 TCGA-3C-AAAU NA Breast NA No FEMALE 2 TCGA-4H-AAAK NA Breast NA No FEMALE 获取用药信息 > clinical.drug <- GDCprepare_clinic(query, clinical.info = "drug") > clinical.drug[,1:4] bcr_pat...
## [2] "bcr_patient_barcode" ## [3] "new_tumor_event_dx_days_to" ## [4] "new_tumor_event_site_surgery" ## [5] "new_tumor_event_radiation_tx" ## [6] "new_tumor_event_pharmaceutical_tx" ## [7] "days_to_new_tumor_event_additional_surgery_procedure" ## [8] "new_neoplasm...
tumor_event-new_neoplasm_event_types-new_neoplasm_event_typenew_tumor_events-new_tumor_event-progression_determined_by_listnew_tumor_events-new_tumor_event_after_initial_treatmentnumber_of_lymphnodes_positive_by_henumber_of_lymphnodes_positive_by_ihcnumber_of_relatives_with_stomach_cancerother_dx...
Clinical_data.primary_neoplasm_melanoma_dx clinical_data.primary_neoplasm_melanoma_dx 文本指示符,表示一个人是否对黑色素瘤有初步诊断。 Text indicator to signify whether a person had a primary diagnosis of melanoma. Clinical_data.primary_therapy_outcome_success ...
age_at_initial_pathologic_diagnosis首次诊断时的年龄,说白了,就是发病年龄 anatomic_neoplasm_subdivision肿瘤的位置(胃的各个位置都是有自己的名字,详情见图示) anatomic_neoplasm_subdivision_other基本类似于上述(肿瘤的位置) antirefux_treatment antirefux_treatment_types-antirefux_treatment_type ...
TCGAbiolinks还提供了⼀些⽤于查询、下载和解析临床数据的函数，GDC数据库中的包含多种不同的临床信息，主要包括：indexed clinical: 使⽤XML⽂件创建的精炼临床数据 XML: 原始临床数据 BCR Biotab: 解析XML⽂件之后的tsv⽂件 indexed信息和XML原始数据之间的区别主要有两个：XML包含的信息更多，如放疗、药物...
prior_dx Text term to describe the patient’s history of prior cancer diagnosis and the spatial location of any previous cancer occurrence. race The text for reporting information about race based on the Office of Management and Budget (OMB) categories. residual_tumor Text terms to describe the...
https://puma.princeton.edu/cgi-bin/tools/viewSchema.pl?table=CLINICAL_SAMPLE http://isb-cancer-genomics-cloud.readthedocs.io/en/latest/sections/progapi/progapi3_tcga/cases_get.html NCI Dictionary of Cancer Terms https://www.cancer.gov/publications/dictionaries/cancer-terms?search=clinical ...
Clinical_data.primary_neoplasm_melanoma_dxclinical_data.primary_neoplasm_melanoma_dx文本指示符,表示一个人是否对黑色素瘤有初步诊断。Text indicator to signify whether a person had a primary diagnosis of melanoma. Clinical_data.primary_therapy_outcome_successclinical_data.primary_therapy_outcome_success衡量...