TCGA一直都是一个让人头疼的数据库,下载数据及其费劲,每次都下载下来一堆文件,还得写个脚本进行整理,这还不是最头疼的,最头疼的是有的数据只有表达量而没有临床数据,这就很离谱了。比如要找一个数据,MMRF-COMMPASS,然而找到的是这样的:这里没有临床数据!那该怎么办呢?经过不懈努力,终于找到了一个方法,可以直接...
[49] "TCGA-CESC" "TCGA-LUSC" "TCGA-STAD" "TCGA-SKCM" [53] "TCGA-LUAD" "TARGET-WT" "TCGA-ACC" "BEATAML1.0-CRENOLANIB" [57] "BEATAML1.0-COHORT" "VAREPOP-APOLLO" "MMRF-COMMPASS" "WCDT-MCRPC" [61] "CGCI-HTMCP-CC" "CMI-ASC" "CMI-MPC" "CMI-MBC" [65] "CPTAC-2" "...
|ORGANOID-PANCREATIC |Pancreas Cancer Organoid Profiling |MMRF-COMMPASS |Multiple Myeloma CoMMpass Study |BEATAML1.0-COHORT |Functional Genomic Landscape of Acute Myeloid Leukemia |CMI-MBC |Count Me In (CMI): The Metastatic Breast Cancer (MBC) Project |CTSP-DLBCL1 |CTSP Diffuse Large B-Cell L...
[49] "TARGET-WT" "MMRF-COMMPASS" "TCGA-BLCA" [52] "NCICCR-DLBCL" "TARGET-ALL-P1" 2.data.category 可以使用TCGAbiolinks:::getProjectSummary(project)查看project中有哪些数据类型,如查询"TCGA-ACC",有7种数据类型,case_count为病人数,file_count为对应的文件数。下载表达谱,可以设置data.category="...
TCGA(The Cancer Genome Atlas, 癌症基因组图谱,https://portal.gdc.cancer.gov/)是美国国家癌症研究所(National Cancer Institute)和美国人类基因组研究所(National Human Genome Research Institute)共同监督的一个项目,旨在应用高通量的基因组分析技术,以帮助人们对癌症有个更好的认知,从而提高对于癌症的预防、诊断和...
TCGA(The Cancer Genome Atlas, 癌症基因组图谱,https://portal.gdc.cancer.gov/)是美国国家癌症研究所(National Cancer Institute)和美国人类基因组研究所(National Human Genome Research Institute)共同监督的一个项目,旨在应用高通量的基因组分析技术,以帮助人们对癌症有个更好的认知,从而提高对于癌症的预防、诊断和...
>getGDCprojects()$project_id[1]"EXCEPTIONAL_RESPONDERS-ER""GENIE-GRCC"[3]"GENIE-DFCI""GENIE-NKI"[5]"GENIE-VICC""GENIE-UHN"[7]"GENIE-MDA""GENIE-MSK"[9]"GENIE-JHU""FM-AD"[11]"OHSU-CNL""MMRF-COMMPASS"[13]"ORGANOID-PANCREATIC""NCICCR-DLBCL"[15]"VAREPOP-APOLLO""CGCI-BLGSP"[17]...
[19] "MMRF-COMMPASS" "TCGA-LUSC" "TCGA-OV"# [22] "TCGA-GBM" "TCGA-UCS" "WCDT-MCRPC"# [25] "TCGA-MESO" "TCGA-TGCT" "TCGA-KICH"# [28] "TCGA-READ" "TCGA-UVM" "TCGA-STAD"# [31] "TCGA-THCA" "OHSU-CNL" "GENIE-DFCI"# [34] "GENIE-NKI" "ORGANOID-PANCREATIC" "VAREPOP-...
xe2 = XenaFilter(xe, filterDatasets = "htseq_counts") xe2@datasets # [1] "TCGA-BLCA.htseq_counts.tsv" "TCGA-LUSC.htseq_counts.tsv" # [3] "TCGA-ESCA.htseq_counts.tsv" "TARGET-RT.htseq_counts.tsv" # [5] "MMRF-COMMPASS.htseq_counts.tsv" "TCGA-MESO.htseq_counts.tsv" # [7...
TCGA(The Cancer Genome Atlas,癌症基因组图谱,https://portal.gdc.cancer.gov/)是美国国家癌症研究所(National Cancer Institute)和美国人类基因组研究所(National Human Genome Research Institute)共同监督的一个项目,旨在应用高通量的基因组分析技术,以帮助人们对癌症有个更好的认知,从而提高对于癌症的预防、诊断和...