GBMLGG Glioma 胶质瘤 HNSC Head and Neck squamous cell carcinoma 头颈鳞状细胞癌 KICH Kidney Chromophobe 肾嫌色细胞癌 KIPAN Pan-kidney cohort (KICH+KIRC+KIRP) 混合肾癌 KIRC Kidney renal clear cell carcinoma 肾透明细胞癌 KIRP Kidney renal papillary cell carcinoma 肾乳头状细胞癌 LAML Acute Myeloid ...
KIPANPan-kidney cohort (KICH+KIRC+KIRP)混合肾癌 KIRCKidney renal clear cell carcinoma肾透明细胞癌 KIRPKidney renal papillary cell carcinoma肾乳头状细胞癌 LAMLAcute Myeloid Leukemia急性髓细胞样白血病 LGGBrain Lower Grade Glioma脑低级别胶质瘤
包括BRCA、COADREAD、GEA、KIRCKICH、KIRP、LGGGBM、LUAD、LUSC、OV和UCEC在内的十种癌症类型的数据是通过两代Infinium芯片生成的,即较旧的HumanMethylation27(HM27)和较新的HumanMethylation450(HM450:396,065个特征)。 因此,我们使用了包含22,601个特征的合并HM27-HM450数据矩阵,这些特征在HM27和HM450平台之间共享。
> TCGAbiolinks:::getGDCprojects()$project_id [1] "GENIE-MSK" "TCGA-UCEC" "TCGA-LGG" "TCGA-SARC" [5] "TCGA-PAAD" "TCGA-ESCA" "TCGA-PRAD" "GENIE-VICC" [9] "TCGA-LAML" "TCGA-KIRC" "TCGA-PCPG" "TCGA-HNSC" [13] "GENIE-JHU" "TCGA-OV" "TCGA-GBM" "TCGA-UCS" [17] "TCG...
Pan-kidney cohort (KICH+KIRC+KIRP) 混合肾癌 KIRC Kidney renal clear cell carcinoma 肾透明细胞癌 KIRP Kidney renal papillary cell carcinoma 肾乳头状细胞癌 LAML Acute Myeloid Leukemia 急性髓细胞样白血病 LGG Brain Lower Grade Glioma 脑低级别胶质瘤 LIHC Liver hepatocellular carcinoma 肝细胞肝癌 LUAD ...
HNSCHead and Neck squamous cell carcinoma头颈鳞状细胞癌 KICHKidney Chromophobe肾嫌色细胞癌 KIPANPan-kidney cohort (KICH+KIRC+KIRP)混合肾癌 KIRCKidney renal clear cell carcinoma肾透明细胞癌 KIRPKidney renal papillary cell carcinoma肾乳头状细胞癌 ...
KIPAN Pan-kidney cohort (KICH+KIRC+KIRP)混合肾癌 KIRC Kidney renal clear cell carcinoma肾透明细胞癌 KIRP Kidney renal papillary cell carcinoma肾乳头状细胞癌 LAML Acute Myeloid Leukemia急性髓细胞样⽩⾎病LGG Brain Lower Grade Glioma脑低级别胶质瘤 LIHC Liver hepatocellular carcinoma肝细胞肝癌 LUAD ...
这个参数主要是设置TCGA数据有两不同入口可以下载,GDC Legacy Archive 和GDC Data Portal,以下是官方的解释两种数据Legacy or Harmonized区别:大致意思为:Legacy 数据hg19和hg18为参考基因组(老数据)而且已经不再更新了,Harmonized数据以hg38为参考基因组的数据(新数据),现在一般选择Harmonized。 Different sources: Legac...
cohort (KICH+KIRC+KIRP) 混合肾癌 KIRC Kidney renal clear cell carcinoma 肾透明细胞癌 KIRP Kidney renal papillary cell carcinoma 肾乳头状细胞癌 LAML Acute Myeloid Leukemia 急性髓细胞样白血病 LGG Brain Lower Grade Glioma 脑低级别胶质瘤 LIHC Liver hepatocellular carcinoma 肝细胞肝癌 LUAD Lung ...
KIPAN - Pan-kidney cohort (KICH+KIRC+KIRP) KIRC - Kidney renal clear cell carcinoma KIRP - Kidney renal papillary cell carcinoma LAML - Acute Myeloid Leukemia LGG - Brain Lower Grade Glioma LIHC - Liver hepatocellular carcinoma LUAD - Lung adenocarcinoma ...