2.文件标识符 参考序列文件标识符应包含入藏号(accession number)和版本号(version number),两者用“.”隔开,除了LRG格式的参考序列之外,其他格式的参考序列均需要版本号。 如:NG_012232 .1 LRG参考序列不包含版本号(例如LRG_199) 3.在参考序列文件标识符和变异位置之间用冒号“:”隔开 如NC_000011.9 : g.1234...
参考序列文件标识符应包含入藏号(accession number)和版本号(version number),两者用“.”隔开,除了LRG格式的参考序列之外,其他格式的参考序列均需要版本号。 如:NG_012232 .1 LRG参考序列不包含版本号(例如LRG_199) 3.在参考序列文件标识符和变异位置之间用冒号“:”隔开 如NC_000011.9 : g.12345611G>A。 HGV...
可知,MIMAT0000062为Accession number,而其代表的是成熟体miRNA:hsa-let-7a-5p【Accession number在miRBase数据库中是对应每个miRNA的唯一编号】。 所以如果手里有一组Accession number,那如何将其批量转换成miRNA名呢? 方法一: 下载miRBase数据库文件:ftp://mirbase.org/pub/mirbase/CURRENT/miRNA.xls.zip,同样以...
All the RNA-Seq and clinical data files that we have processed are available from Gene Expression Omnibus (accession numbers: GSE62820 and GSE62944). For informational purposes, we have also provided a bash script (Scripts/process_tcga_level_3) that contains the steps for producing "Level 3"...
The ESCC RNA-Seq, miRNA-Seq data, clinical data were obtained from The Cancer Genome Atlas(TCGA) (https://portal.gdc.cancer.gov/projects/TCGA-ESCA; dbGaP Study Accession number is phs000178). This study complies with its data use and publication rules. Abbreviations ESCC: Esophageal squamous ...
Figure 1: Genome copy number abnormalities. a, 将489例高级别浆液性卵巢癌(HGS-OvCa)与197例多形性胶质母细胞瘤(GBM)肿瘤的拷贝数谱进行比较47。沿着正常基因组的距离(垂直轴,按染色体划分),将拷贝数增加(红色)和减少(蓝色)绘制出来。 b, 显著且局灶性扩增(红色)和缺失(蓝色)区域沿基因组绘制。注释包括20...
('ACCESSION','NAME','VERSION')) rt <- cbind(iterms[,1:2], rt[,2:ncol(rt)]) rt=as.matrix(rt) #将dataframe转化为matrix rownames(rt) = rt[,2] #获取基因名称 exp = rt[,4:ncol(rt)] #组成新的表达矩阵 barcode=colnames(exp) #获取所有样本的barcode dataSmTP <- TCGAquery_Sample...
Scientific Reports volume 9, Article number: 7442 (2019) Cite this article 8944 Accesses 47 Citations 5 Altmetric Metrics details Abstract Glioblastoma multiforme (GBM), a deadly cancer, is the most lethal and common malignant brain tumor, and the leading cause of death in adult brain tumors. ...
The data underlying this article are available in GEO Database at https://www.ncbi.nlm.nih.gov/geo/, and can be accessed with accession number: GSE68465, GSE37745, GSE50081, and Xena, at https://xenabrowser.net/datapages/?cohort = TCGA%20Pan-Cancer%20(PANCAN). Funding This work was...
The size of each dot reflects the number of specimens. PGK1 pS203 phosphorylated phosphoglycerate kinase 1 (PGK1) S203, PDHK1 pT338 phosphorylated phosphorylate pyruvate dehydrogenase kinase 1 (PDHK1) T338; BRCA breast carcinoma, LIHC liver hepatocellular carcinoma, LUAD lung adenocarcinoma, STAD ...