# print " - Reversing the lookup tree\n"; # foreach my $tax ( @{$taxonomy} ) { # my $id = $tax->{'id'}; # my $pid = $tax->{'parent'}; # if ( defined $pid ) { # $children{$pid}->{"$id"} = 1; # } # } ...
Run annotater: Reann.pl -file YOURSEQUENCES.FA -config CONFIGFILE -tax -remotetax. These options tell annotater to search your sequences against the list of searches in your configuration file and to lookup taxonomy information (-tax) for subject hits by querying NCBI (-remotetax). Your re...
Let's take a look on what is stored in these two taxonomy fields. The TaxonomyField which is the lookup looks quite similar to a lookup column. It has the lookup id and the value: The Note field (the hidden field) on the other hand contains just the term identifier and is the actual...
Astrolabe provides scalable data collection and attribute based lookup but has limited capacity for performing analysis. Astrolabe partitions groups of hosts into an over- lapping hierarchy of zones in a manner similar to DNS. Astrolabe zones have a recursive definition: a zone is either a host or...
mapping = gp.getExternalCode(TaxonomyType.NAT_GP_CODE);if(mapping!=null) { xcn.getIDNumber().setValue(mapping.getTaxonomyCode()); }if(gp!=null&&gp.getNameIsNotNull()&&gp.getName().getTitleIsNotNull()) xcn.getPrefixEgDR().setValue(svc.getRemoteLookup(gp.getName().getTitle().getID...
(); print " - Reversing the lookup tree\n"; foreach my $tax ( @{$taxonomy} ) { my $id = $tax->{'id'}; my $pid = $tax->{'parent'}; if ( defined $pid ) { $children{$pid}->{"$id"} = 1; } } # Add all children my @childlist = (); my $unresolvedRMSpecies = ...