Tartary buckwheat database(TBD):an integrative platform for gene analysis of and biological information on Tartary buckwheatdoi:10.1631/jzus.B2100319Journal of Zhejiang University-SCIENCE B - 本研究首次构建了苦荞数据库,...Liu, MoyangSun, Wenjun...
we find that Tartary buckwheat originated in the Himalayan region and then spread southwest possibly along with the migration of the Yi people, a minority in Southwestern China that has a long history of planting Tartary buckwheat. Along with the expansion of the Mongol ...
Results Identification of MYB genes in tartary buckwheat To identify MYB proteins in tartary buckwheat, hmmer search program (HMMER3.0) was conducted using Hid- den Markov model (HMM) of the MYB domain against the tartary buckwheat protein database. After confirma- tion of the existence of...
The buckwheat-specific WGD was a key contributor to its gene family expansions. Further analysis using RNA-seq data showed that 91.72% (12 632 out of 13 762) of the identified intra-genome collinear genes were expressed in at least one of the tissues we analyzed, and 72.03% of them were...
As such a detailed understanding of the maternal genealogy of Tartary buckwheat has not been thoroughly investigated. Results In this study, we de novo assembled 513 complete plastomes of Fagopyrum and compared with 8 complete plastomes of Fagopyrum downloaded from the NCBI database to construct ...
Despite its nutraceutical and agricultural value, the characterization of its genetics and its domestication history is limited.Here, we report a comprehensive database of Tartary buckwheat genomic variation based on whole-genome resequencing of 510 germplasms. Our analysis suggests that two independent ...
The Arabidopsis genome sequence was acquired from the TAIR database (https://www.arabidopsis.org/). The Tartary buckwheat genome was obtained from the Tartary buckwheat Genome Project (http://www.mbkbase.org/Pinku1) [40]. Other plant genome sequences (M. polymorpha, V. carteri, C. reinhardt...
This study aimed to systematically identify and analyze LOX genes in Tartary buckwheat. Eight LOX genes, which were unevenly distributed on five chromosomes, were identified in the Pinu1 Genome database. The data indicated that during long evolution, FtLOX genes were subjected to purifying selection...
TEM microphotographs of cells from root tips. Ultrastructure of Tartary buckwheat roots under (A,B) control, (C,D) 30 µM CdCl2for 6 h, and (E,F) 30 µM CdCl2for 48 h. Abbreviations: NUE, nucleolus; NU: nucleus; NM, nuclear membrane; V, vacuole; M, mitochondria; PM, plasma...
In this study, the PYL gene family of Tartary buckwheat was identified and analyzed based on the whole genome, and 19 paralogous form FtPYL genes of Tartary buckwheat were bioinformatically analyzed. The expression patterns of 19 paralogous form FtPYL genes in Tartary buckwheat cultivars under di...