plink --bfile rawData --indep-pairwise50 10 0.1 # removal each SNP that has an R2 value of greater than 0.1 with any other SNP within a 50-SNP sliding window (advanced by 10 SNPs each time). plink --bfile rawData --extracthttp://plink.prune.in--make-bed --out prunedData tbl=re...