Structural variations in plant genomes. Brief Funct Genomics. 2014;13(4):296–307. 13. Marroni F, Pinosio S, Morgante M. Structural variation and genome complexity: is dispensable really dispensable? Curr Opin Plant Biol. 2014;18:31–6. 14. Weissensteiner MH, Bunikis I, Catalan A, ...
Due to their size and complex nature, until recently, it has been difficult to truly capture these variations. Recent advances in sequencing technology and computational analyses now permit more extensive studies of SVs in plant genomes. In tomato, advances in sequencing technology have allowed ...
The big picture of the total genetic diversity within Asian cultivated rice has been uncovered since the sequencing of 3,000 rice genomes, including the SNP data publicly available in the SNP-Seek database. Here we report other aspects of the genetic diversity, including rice sequences assembled...
We identified large presence or absence variations of pSc200 tandem repeats on the 1RS terminal, suggesting its own rapid evolution in the wheat genome. The high-quality genome assemblies of 17 representatives developed and their good complementarity to the 10+ pan-genomes offer a robust platform ...
The extent of structural variants (SVs), in particular copy number variations (CNVs) in plant and animal genomes remains unknown, mainly due to the lack of popudoi:10.2139/ssrn.3525548Peng QinHongwei LuHuilong DuWeilan ChenShigui LiSSRN Electronic Journal...
PHOSPHATE1 (PHO1) gene family members have diverse roles in plant growth and development, and they have been studied in Arabidopsis, rice, and Physcomitrella. However, it has yet to be described in other plants. Therefore, we surveyed the evolutionary patterns of genomes within the plant PHO1...
(e.g., cloud buckets or local servers). Chromoscope captures distinct patterns of structural variations and their copy number footprint in samples with different types of chromosomal instability, such as chromothripsis, or associated with loss of BRCA1 -/-, BRCA2 -/-, or CCNE1 amplification (...
Sequencing of genes and genomes started with the pioneering work of Sanger, and the completion of the genome sequencing of Arabidopsis thaliana was one of the most important breakthroughs in genomic research in plant biology (Sanger et al., 1977; Sanger and Coulson, 1975; The Arabidopsis Genome ...
Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes Shahab A, Ruan X, et al .: Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer ... AM Hillmer,F...
CEN5is larger and more repetitive in Ler (3.37 vs 2.66 Mb) (Additional file7: Fig. S5). The extensiveCEN178repeat array polymorphisms, including inversions, between the Col and Ler genomes could directly contribute to NRZ crossover suppression, in addition to the effects of epigenetic informatio...