StereoExpDataobjectwith n_cells X n_genes=51601X30798bin_type:cell_bins offset_x=None offset_y=None cells:['cell_name','total_counts','n_genes_by_counts','pct_counts_mt']genes:['gene_name','n_cells','n_counts','mean_umi']#可视化data.plt.violin()data.plt.spatial_scatter()data....
140 # 1.2. preprocess and validate counts data File ~/miniconda3/envs/stereopy/lib/python3.8/site-packages/stereopy-0.14.0b1-py3.8.egg/stereo/algorithm/cell_cell_communication/main.py:370, in CellCellCommunication._get_ref_database(self, db_path) 367 database_manager.add_repository(ProteinRe...
比如Bin100表示一个分析单元包含100×100=10000个 DNB 区域的数据,而cellbin是根据ssDNA进行细胞分割后的单个细胞的区域。Bin大小的选择可以根据细胞大小、基因数量以及细胞聚类效果进行调整。 但是我查看网上的资料有的图DNB也可能是715nm的。这个要根据实际测序情况才知道。 技术流程图 有500/715nm 常见的名称: Bin...
Binary file added BIN +320 KB docs/source/_static/SpaTrack.png Unable to render rich display Invalid image source.1 change: 1 addition & 0 deletions 1 docs/source/conf.py Original file line numberDiff line numberDiff line change @@ -115,6 +115,7 @@ "Tutorials/Cell_Community_...