For the top N pathways (based on significant results from maaslin2), generate plot for each categorical metadata variable. If longitudinal, run the permanova script. If not longitudinal, run the beta diversity script to generate stacked barplots of R-squared and P Values for adonis run on each...
[26]. The results were verified using mapping (minimap2). A detailed description of the bioinformatic process can be found in Spohr et al., 2024 [15]. To provide a visual representation of the microbial species present in the wound swabs, stacked bar charts were generated using the Python-...