STAARpipeline-Tutorial This is a tutorial for (1) automatically functionally annotating the variants of whole-genome/whole-exome sequencing (WGS/WES) studies and integrating the functional annotations with the genotype data usingFAVORannotatorand (2) performing single-/multi-trait association analysis of...
Please see the user manual and tutorial for detailed usage of staarpipeline app. Cloning an Applet To acquire the staarpipeline applet, you will need to compile this applet for your respective DNANexus project, by cloning the repository from github and dx build an APPLET into your own workspace...
Please see theSTAARpipelineuser manualfor detailed usage of STAARpipeline package. Please see theSTAARpipelinetutorialfor a detailed example of analyzing sequencing data using STAARpipeline. Data Availability The whole-genome functional annotation data assembled from a variety of sources and the precomputed...
Please see theSTAARpipelineSummaryuser manualfor detailed usage of STAARpipelineSummary package. Please see theSTAARpipelinetutorialfor a detailed example of summarizing and visualizing association analysis results using STAARpipelineSummary. Data Availability ...