The subsequent ∼90 samples (including patients from the pembrolizumab and a subset of controls), assayed on GPL20078, were batch corrected using these factors and added to the original set, yielding a normalized expression dataset comprising 987 patients x 19,134 (common) genes. These ...
equivocal: 2+, negative:1+). Pre-treatment tumor samples were assayed using Agilent 44 K (32627) or 32 K (15746) expression arrays; and these data were combined into a single gene-level dataset after batch-adjusting using ComBat28. ERBB2 amplicon gene expression ...
equivocal: 2+, negative:1+). Pre-treatment tumor samples were assayed using Agilent 44 K (32627) or 32 K (15746) expression arrays; and these data were combined into a single gene-level dataset after batch-adjusting using ComBat28. ERBB2 amplicon gene expression ...
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