git clone https://github.com/Illumina/SpliceAI.gitcdSpliceAI python setup.py install SpliceAI requirestensorflow>=1.2.0, which is best installed separately via pip or conda (see theTensorFlowwebsite for other installation options): pip install tensorflow#orconda install tensorflow ...
Human Genomics (2023) 17:7 https://doi.org/10.1186/s40246-023-00451-1 Human Genomics PERSPECTIVE Open Access SpliceAI‑visual: a free online tool to improve SpliceAI splicing variant interpretation Jean‑Madeleine de Sainte Agathe1,2*, Mathilde Filser1, Bertrand Isidor3, ...
SameCodon.pm SingleLetterAA.pm SpliceAI.pm SpliceRegion.pm StructuralVariantOverlap.pm SubsetVCF.pm TSSDistance.pm dbNSFP.pm dbNSFP_replacement_logic dbscSNV.pm gnomADc.pm miRNA.pm plugin_config.txt satMutMPRA.pm Breadcrumbs VEP_plugins /
Illumina首席技术官Mostafa Ronaghi表示:“软件的开源发布表明Illumina不仅致力于成为全球最大的DNA测序数据推动者,同时还大力推广AI工具,让临床医生和研究人员能够同步跟进基因组数据的深度和广度。” Illumina团队与加州大学旧金山分校和斯坦福大学的合作者共同开发了SpliceAI,这是一个先进的深度神经网络,用于发现自闭症和智力...
spliceai算法是一款基于 32个卷积的深度神经网络的软件,可从 mrna前体序列对剪接位点进行准确预测,预测信息包括剪接位点的位置及异常的概率。实际工作中,可采用类似的软件辅助剪接变异的识别。 (4)挖掘更多 tecta基因有害同义变异本...
Plugins for the Ensembl Variant Effect Predictor (VEP) - VEP_plugins/SpliceAI.pm at release/113 · Ensembl/VEP_plugins
spliceai_api tests .dockerignore .gitignore Dockerfile README.md copy_small_fasta.sh docker-compose-nginx.yml docker-compose-system-tests.yml docker-compose.yml pytest.ini requirements-dev.txt requirements.txt run-system-tests.shBreadcrumbs SpliceAIAPI / nginx/ Directory actions More optionsLatest...
Plugins for the Ensembl Variant Effect Predictor (VEP) - VEP_plugins/SpliceAI.pm at release/107 · Ensembl/VEP_plugins
Hello, Because in the viewer the bars that indicate the delta scores are on top of a base and not in between bases, I found myself wondering if that means SpliceAI predicts the splicing score change happens to the left or to the right of...