Spatial-CITE-seq comparison with scCITE-seq The scCITE-seq dataset was obtained from a published study15. It was first cleaned by removing cells with fewer than ten total ADT UMIs and further randomly downsampled to 10,000 cells. scCITE-seq and spatial-CITE-seq datasets were combined, norma...
We profiled 189 proteins and whole transcriptome in multiple mouse tissue types with spatial CITE sequencing and then further applied the method to measure 273 proteins and transcriptome in human tissues, revealing spatially distinct germinal center reactions in tonsil and early immune activation in ...
In this study, we extended co-indexing of transcriptomes and epitopes (CITE) to the spatial dimension and demonstrated high-plex protein and whole transcriptome co-mapping. We profiled 189 proteins and whole transcriptome in multiple mouse tissue types with spatial CITE sequencing and then further ...