Squidpy - Spatial Single Cell Analysis in PythonSquidpy is a tool for the analysis and visualization of spatial molecular data. It builds on top of scanpy and anndata, from which it inherits modularity and scalability. It provides analysis tools that leverages the spatial coordinates of the data...
Analysis Cell Size search_radius (可选) 在其范围内计算密度的搜索半径。单位基于输出空间参考投影的线性单位。 例如,如果单位为米,若要包含一英里邻域内的所有要素,可将搜索半径设置为 1609.344(1 英里 = 1609.344 米)。 默认值为输出空间参考中输出范围的宽度或高度的最小值除以 30。
Planar Point Pattern Analysis in PySAL Jupyter Notebook88BSD-3-Clause28242UpdatedApr 24, 2025 momepyPublic Urban Morphology Measuring Toolkit Python530BSD-3-Clause6421(1 issue needs help)4UpdatedApr 22, 2025 mapclassifyPublic Classification schemes for choropleth mapping. ...
Spatial analysis Using spatial analysis capabilities inArcGIS Pro, you can perform the following types of operations on geographic data: Extract and overlay data. Add and calculate attribute fields. Summarize and aggregate data. Calculate statistics. ...
arcpy.Buffer_analysis("infeatures","outbuffer",5000) 无需为每个工具和类加上前缀arcpy.sa即可使用地图代数。 outRas=Sin("inraster1")+Raster("inraster2")+8 要了解有关导入 ArcPy、地图代数或其他功能时的可用选项的详细信息,请参阅导入 ArcPy。
您可以使用分析范围(Python 中为analysis_extent)参数为独立工具操作明确指定输出分析区域,或将覆盖环境设置作为工作流的一部分。 您可以通过输入值、选择显示范围、选择图层或浏览至输入数据集的方式指定范围。 默认分析范围值是从输入栅格值和输入栅格或要素掩膜数据值的交集计算得出的。
The spatial analysis service contains a number of tasks that allow you to perform common spatial analyses on your data.
PySAL is an open source library for spatial analysis written in the object-oriented language Python. It is built upon shared functionality in two exploratory spatial data analysis packages--GeoDA and STARS--and is intended to leverage the shared development of these components. This paper presents ...
Squidpy, a Python framework ( Spatial Quantification of Molecular Data in Python) brings together tools from omics and image analysis; built on top of Scanpy and Anndata scalable description of spatial molecular data store + manipulate + interactively ...
Single-cell spatial transcriptome reveals cell-type organization in the macaque cortex. Cell https://doi.org/10.1016/j.cell.2023.06.009 (2023). Article PubMed PubMed Central Google Scholar Li, Z. & Zhou, X. BASS: multi-scale and multi-sample analysis enables accurate cell type clustering ...