5.在下载CSV表中,重点关注错义突变位点(missense_variant)和表型分级;将非错义突变位点,和突变为多个氨基酸的位点以及表型中无数据的表格删除掉,然后将剩余突变位点移至Map2(RiceVarMap2)中进行单倍型以及分布的分析。 1 2 3 4 4 5 6.在MAP上分析时,需要将刚才得到位点进行调整,方便MAP2识别。例如在5号染色体...
3,000 Rice Genomes and SNP-Seek: Rice Allele Mining Made EasyMauleon, Ramil P
We have identified about 20 million rice SNPs by aligning reads from the 3000 rice genomes project with the Nipponbare genome. The SNPs and allele information are organized into a SNP-Seek system (http://www.oryzasnp.org/iric-portal/), which consists of Oracle database having a total number...
SNP-Seek: the Largest Database of Rice Natural Variations.N. Alexandrov
SNP-Seek Resource for Rice ResearchLocedie Mansueto