snpEff-2 6)Number of effects by type and region(有效变异数和百分比): 左边为按类型划分有效变异数,包括(从上往下):3’端主要UTR变异(UTR是成熟mRNA分子5'或3'端不被翻译的部分,一般在mRNA转运、稳定性和翻译调节中起重要作用)、5’端主要UTR提前启动子获得变异、5’端主要UTR变异、下游基因变异、起始密码...
##INFO=<ID=LOF,Number=.,Type=String,Description="Predicted loss of function effects for this variant. Format: 'Gene_Name | Gene_ID | Number_of_transcripts_in_gene | Percent_of_transcripts_affected'"> ##INFO=<ID=NMD,Number=.,Type=String,Description="Predicted nonsense mediated decay effects...
SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of genetic variants (such as amino acid changes) 利用variant calling得到的vcf文件和gff3格式的基因组注释文件得到变异位点位于基因组的什么位置(外显子、内含子等)以及变异位点为同义突变或者为非同义突变的信息。
[ X] Build your own docker image using a Dockerfile [X ] Directory structure should be name of the tool in lower case with special characters removed with a subdirectory of the version number (i.e. spades/3.12.0/Dockerfile) [ X] Includes the recommended LABELS [X ] Edit main README....
It annotates and predicts the effects of genetic variants (such as amino acid changes) 利用variant calling得到的vcf文件和gff3格式的基因组注释文件得到变异位点位于基因组的什么位置(外显子、内含子等)以及变异位点为同义突变或者为非同义突变的信息。 软件下载地址 http://sourceforge.net/projects/snpeff/...
Available commands:[eff|ann]:Annotate variants/calculateeffects(you canuseeither'ann' or'eff',they mean the same).Default:ann(no command or'ann').build:Build a SnpEff database.buildNextProt:Build a SnpEffforNextProt(using NextProt'sXML files).cds:Compare CDS sequences calculated form a SnpEf...
SnpEff: SNP的vcf文件注释 SnpEff文章 标题:A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff 中文:预测注释SNP的作用 杂志:Fly (Austin) 时间:2012 引用:6162 (谷歌学术2021.11.19) 地址 主页:http://pcingola.github.io/SnpEff/...