conda install cellsnp-lite 运行 Mode 1: pileup with given SNPs Mode 1a: droplet-based single c...
conda install cellsnp-lite 运行 Mode 1: pileup with given SNPs Mode 1a: droplet-based single cells Require: a single BAM/SAM/CRAM file, e.g., from CellRanger; a list of cell barcodes, e.g., barcodes.tsv file in the CellRanger directory, outs/filtered_gene_bc_matrices/; a VCF fi...
既然是conda提供的方式,我们就按照conda的思维就好了。 $ g++-std=c++11-I/public/home/liuxs/anaconda3/envs/biosoft/include/snp-pileup.cpp-L/public/home/liuxs/anaconda3/envs/biosoft/lib-lhts-Wl,-rpath=/public/home/liuxs/anaconda3/envs/biosoft/lib-o snp-pileup 这里只是去除了-I/public/hom...
conda install cellsnp-lite 运行 Mode 1: pileup with given SNPs Mode 1a: droplet-based single cells Require: a single BAM/SAM/CRAM file, e.g., from CellRanger; a list of cell barcodes, e.g.,barcodes.tsvfile in the CellRanger directory,outs/filtered_gene_bc_matrices/; a VCF file f...
conda install cellsnp-lite 运行 Mode 1: pileup with given SNPs Mode 1a: droplet-based single cells Require: a single BAM/SAM/CRAM file, e.g., from CellRanger; a list of cell barcodes, e.g.,barcodes.tsvfile in the CellRanger directory,outs/filtered_gene_bc_matrices/; a VCF file ...
conda install cellsnp-lite 运行 Mode 1: pileup with given SNPs Mode 1a: droplet-based single cells Require: a single BAM/SAM/CRAM file, e.g., from CellRanger; a list of cell barcodes, e.g., barcodes.tsv file in the CellRanger directory, outs/filtered_gene_bc_matrices/; a VCF fi...
conda install cellsnp-lite 运行 Mode 1: pileup with given SNPs Mode 1a: droplet-based single ...
SNP检测：使用SNP calling软件（如GATK、Samtools等）检测每个样品中存在的SNP位点，并根据覆盖度、质量等...