Here we demonstrate that the large language model GPT-4 can accurately annotate cell types using marker gene information in single-cell RNA sequencing analysis. When evaluated across hundreds of tissue and cell types, GPT-4 generates cell type annotations exhibiting strong concordance with manual annot...
Express Single-Cell Analysis SystemPerforming Quality Control on the Final Sequencing LibrariesSingle-Cell Labeling with BD® AbSeq Ab-Oligos and the BD® Single-Cell Multiplexing KitBD Rhapsody™ Bioinformatics PipelineOne Workflow: Cell Enrichment to Single Cell Transcriptome and Proteome Analysis ...
Recent advances in single-cell technologies have enabled high-throughput molecular profiling of cells across modalities and locations. Single-cell transcriptomics data can now be complemented by chromatin accessibility, surface protein expression, adapti
We have developed Granatum, a web-based scRNA-Seq analysis pipeline to make analysis more broadly accessible to researchers. Without a single line of programming code, users can click through the pipeline, setting parameters and visualizing results via the interactive graphical interface. Granatum conve...
DeepFLEX: Deep learning-based single-cell analysis pipeline for FLuorescence multiplEX imaging - perlfloccri/DeepFLEX
作者用mixture control experiments的方法,来评估现存的主流的pipeline,选出了每个方面最好的工具,发在了NM上。 评估的工具类型: 3,913 combinations of data analysis methods normalization imputation clustering trajectory analysis data integration 评估的方法: ...
Express Single-Cell Analysis SystemPerforming Quality Control on the Final Sequencing LibrariesSingle-Cell Labeling with BD® AbSeq Ab-Oligos and the BD® Single-Cell Multiplexing KitBD Rhapsody™ Bioinformatics PipelineOne Workflow: Cell Enrichment to Single Cell Transcriptome and Proteome Analysis ...
Analysis categoryPipelineEnvironmentDescription Overall analysis Seurat [78] R A comprehensive tool to perform QC analysis on diverse types of single-cell data. Spatial interference using in situ RNA patterns as a reference. Compatible with multimodal data.http://satijalab.org/seurat/ Scanpy [79] Py...
Sequenced files were processed through the CellRanger pipeline (v.3.10, 10x Genomics) using the Ensembl Gallus gallus genome (GRCg6a, release 95) compiled with the CellRanger mkref function. Explant culture Explants of prospective hypothalamus were isolated from either HH4 or HH6 embryos by ...
Kellogg, R. A., Gómez-Sjöberg, R., Leyrat, A. A. & Tay, S. High-throughput microfluidic single-cell analysis pipeline for studies of signaling dynamics.Nat. Protoc.9, 1713–1726 (2014). CASPubMedGoogle Scholar Kellogg, R. A. & Tay, S. Noise facilitates transcriptional control under...