This is the same algorithm that is used in Signal and many other messaging apps; it provides OTR messaging with forward secrecy (each message is encrypted by its own ephemeral key) and break-in recovery (the keys are frequently re-negotiated as part of the message exchange). Two pairs of ...
In the first ASA config- uration (denoted fML + fopt), the best performing model in the vertical test configuration (i.e., model 6 in the previous set of tests) was used as the HP planner and Algorithm 1 with b_step = 0.2 and n_step = 0.1 as the HA planner. Given these step ...
The Spectrum Mill database search algorithm (Agilent Technologies, Santa Clara, CA) was used to search the NCBInr and UniProt databases, employing the taxonomy filter for nematodes. Parameters used for the search included the monoisotopic mass, a peptide mass tolerance of 1.2 Da and a fragment ...
Simple sequence repeats (SSRs) inT. hamiensisvar. qatarensis,T. simplex,andrelatedspecies plastomes. (A) Mono-nucleotides SSRs (B) Di-nucleotides SSRs, (C) tri-nucleotides SSRs, (D) Penta-nucleotides SSRs, (E) hexa-nucleotides SSRs, (F) number of SSRs in protein-coding region, (G) num...
Proteins passing these filters were exported as “unweighted spectrum counts” for analysis by the Significance Analysis of INTeractions (SAINT) algorithm (45), as detailed below. For phosphorylation analysis, the Percolator algorithm was used to calculate posterior error probabilities (PEP) and q-...
2.5. De Novo Contig Assembly Host-processed reads were used as input into the de novo assembly algorithm. Since the PHRED quality score at the 50 bp position was greater than the standard minimum PHRED quality score of 20 used for read trimming, no read trimming was performed. VelvetOptimiser...