This matrix was used as an input for a hierarchical clustering algorithm (implemented in Matlab) and the clustered matrix was visualized. Model clustering allows to detect models describing similar biochemical
this can be as simple as a subtraction, but more complex calculations are possible. Right now, it is possible to generate the clusters using a hierarchical clustering and the popular K-Means algorithm. For the hierarchical algorithm there are different "linkage" (single, complete, average and uc...
fuzzy-c-means is a Python module implementing the Fuzzy C-means clustering algorithm. installation the fuzzy-c-means package is available in PyPI. to install, simply type the following command: pip install fuzzy-c-means citation if you use fuzzy-c-means package in your paper, please cite ...
ARACNE is an algorithm to identify direct transcriptional interactions in mammalian cellular networks and promises to enhance our ability to use microarray data to elucidate cellular processes and to identify molecular targets of pharmacological drugs in mammalian cellular networks (Margolin et al., 2006)...
For non-numerical features, we may need to get creative. One thing to remember is that this algorithm assumes our distance to be a metric. If you use Python, Kernel PCA isimplemented in scikit-learn. The advantageof the Kernel PCA method is that it can capture non-linear data structures....
STAGE 2:Semantic Clustering In the next stage, based on the density of node connections and for scalability, the Leiden algorithm is applied to discover modular communities by grouping closely related nodes into hierarchical clusters Community detection is used to partition the graph index into groups...
Text classifiers using supervised machine learning can be adapted to new classes and texts without modifying the algorithm, requiring an annotated training dataset only [2]. However, such training datasets are often not available for a certain class or topic of interest and a custom dataset needs ...
This paper reviews RL algorithms for two-player zero-sum Markov games and introduces a new, simple, fast, algorithm, called QL2. QL2 is compared to several standard algorithms (Q-learning, Minimax and minimax-Q) implemented with the Qash library written in Python. The experiments show that ...
Simple Linear Iterative Clustering (SLIC) implementation using python - GitHub - darshitajain/SLIC: Simple Linear Iterative Clustering (SLIC) implementation using python
RCL, fast multi-resolution consensus clustering Status and plans MCL Markov CLustering or the Markov CLuster algorithm, MCL is a method for clustering weighted or simple networks, a.k.a. graphs. It is accompanied in this source code by other network-related programs, one of which is RCL (res...