《Similarity network fusion for aggregating data types on a genomic scale》 链接:https://github.com/yik-cyber/SNFtool 总结 相似融合网络:聚合不同的基因数据类型 论文以计算机视觉多视图方式为启发,设计了一种图融合网络用于解决基因数据不能综合处理的困难。 本文考虑将患同一种癌症的病人组成一个群体,利用群...
(本文是对similarity network fusion for aggregating data types on a genomic scale 整体文章的翻译,对于后面理论公式部分可以参照该朋友的笔记) 摘要 近期的技术已经使收集不同类型的全基因组数据十分划算,结合这些数据去创建一个给定的疾病或生物过程的一个全面视图的计算方法是有必要的。相似网络融合(SNF:similarity...
Similarity network fusion for aggregating headspace GC–MS and direct analysis in real time–mass spectrometry data from solid samples to enhance species identification efficiency of high–temperature heated woodGAS chromatography/Mass spectrometry (GC-MS)...
image 论文以一个细胞瘤数据集进行了分析,展示了SNF的具体过程,这里使用了三种基因数据,首先也是根据这三种基因数据分别进行构图,构图后对三个图进行融合。利用融合之后的图进行聚类和生存预测。使用谱聚类的方式将病人聚类成不同的癌症亚型,并将网络作为一个正则化项,加入到回归任务中,得到病人的生存风险预测。 image...
Similarity network fusion for aggregating data types on a genomic scale. Similarity network fusion for aggregating data types on a genomic scale. Nature methods, 11(3):333-337, 2014.Wang, B.; Mezlini, A.M.; Demir, F... Wang,Bo,Mezlini,... - 《Nature Methods》 被引量: 344发表: ...
25. In the next step, the selected similarity types are integrated by a non-linear similarity fusion method called SNF26. Finally, the integrated similarity matrix, in addition to the interaction data is used for training the neural network. NDD can provide an accurate framework for predicting ...
Similarity network fusion for aggregating data types on a genomic scale. Nat Methods 11: 333–337. Article CAS PubMed Google Scholar Weickert TW, Goldberg TE, Gold JM, Bigelow LB, Egan MF, Weinberger DR (2000). Cognitive impairments in patients with schizophrenia displaying preserved and ...
Similarity network fusion for aggregating data types on a genomic scale. Nat Methods 11: 333–337. Article CAS PubMed Google Scholar Weickert TW, Goldberg TE, Gold JM, Bigelow LB, Egan MF, Weinberger DR (2000). Cognitive impairments in patients with schizophrenia displaying preserved and ...
《Similarity network fusion for aggregating data types on a genomic scale》 本文提出SNF:Similarity network fusion:为每一类构建一个相似度网络;用非线性方法融合所有的相似度网络得到一个单一的输出网络。 82920 solr Similarity:切换不同相似度计算方法 Similarity改变solr的打分机制; solr本身已经提供了几种算法 ...
Similarity network fusion for aggregating data types on a genomic scale. Nat Methods 11: 333–337. Weickert TW, Goldberg TE, Gold JM, Bigelow LB, Egan MF, Weinberger DR (2000). Cognitive impairments in patients with schizophrenia displaying preserved and compromised intellect. Arch Gen Psychiatry...