不论是本地运行,还是在线服务,最后都会给出对应的sift score以及变异位点有害程度的描述,输出结果列数较多,截取了SIFT_SCORE和SIFT_PREDICTION两列的结果 SIFT_PREDICTION对变异位点的有害程度进行了描述,TOLERATED代表良性,对蛋白质功能影响不大;DELETERIOUS代表有害,对蛋白质功能造成了影响。
不论是本地运行,还是在线服务,最后都会给出对应的sift score以及变异位点有害程度的描述,输出结果列数较多,截取了SIFT_SCORE和SIFT_PREDICTION两列的结果 SIFT_PREDICTION对变异位点的有害程度进行了描述,TOLERATED代表良性,...
1. ##SIFT_Threshold: 0.05 2. ##INFO=<ID=SIFTINFO,Number=.,Type=String,Description="SIFT information. Format: Allele|Transcript|GeneId|GeneName|Region|VariantType|Ref_Amino_Acid/Alt_AminoAcid|Amino_position|SIFT_score|SIFT_median|SIFT_num_seqs|Allele_Type|SIFT_prediction"> SIFT注释文字插入到...
HumVar预测具有强烈危害的突变,HumDiv预测可能参与复杂疾病的稀有allele,在HumDiv中,具有中等危害的allele也被归为damaging。 probably damaging的区间值为0.909-1,possibly damaging为0.447-0.908,benign为0-0.446。 Two pairs of datasets were used to train and test PolyPhen-2 prediction models. The first pair,...
y_test_pred.append(prediction) accuracy=accuracy_score(y_test_true,y_test_pred) confusion_mat=confusion_matrix(y_test_true,y_test_pred) print("Accuracy: {:.2f}%".format(accuracy*100)) print("Confusion Matrix:\n{}".format(confusion_mat)) ...
net.blobs['data'].data[...] =in_#run net and take argmax for predictionnet.forward() sem_out= net.blobs['score_sem'].data[0].argmax(axis=0)#plt.imshow(out,cmap='gray');plt.imshow(sem_out) plt.axis('off') plt.savefig('coast_bea14_sem_out.png') ...
1. If your organism is not listed, you can create your ownSIFT prediction database 2. Annotate variants: To run the SIFT 4G Annotator on Linux or Mac via command line, type the following command into the terminal: java -jar <Path to SIFT4G_Annotator> -c -i <Path to input vcf file...
[...] = in_ # run net and take argmax for prediction net.forward() sem_out = net.blobs['score_sem'].data[0].argmax(axis=0) # plt.imshow(out,cmap='gray'); plt.imshow(sem_out) plt.axis('off') plt.savefig('coast_bea14_sem_out.png') sem_out_img = Image.fromarray(sem_...
在Kaggle竞赛“自行车共享需求预测(Bike Sharing Demand Prediction)”中,参与者被要求根据历史模式(包括使用情况,及对应的天气、时间和其他数据)来预测华盛顿地区的租赁需求。 在一篇获胜者分享中也提到,智能特征工程有助于提高模型性能。他创建的一些特征如下: ...
2. ##INFO=<ID=SIFTINFO,Number=.,Type=String,Description="SIFT information. Format: Allele|Transcript|GeneId|GeneName|Region|VariantType|Ref_Amino_Acid/Alt_AminoAcid|Amino_position|SIFT_score|SIFT_median|SIFT_num_seqs|Allele_Type|SIFT_prediction"> SIFT注释文字插入到了INFO列的末尾: DELETERIOUS: ...