SGN VIGS Tool:https://vigs.solgenomics.net/ 使用简单,把自己需要沉默的基因cds序列粘贴进去直接RUN即可。SGN VIGS Tool除了可以选取烟草VIGS片段外,该数据库还包含许多物种的基因组。如: 如果你需要的物种或基因组不在列表中,或可以写邮件告知网站的维护人员,说不定就会被添加其中。邮件地址:sgn-feedback@solgen...
when using gene IDs as input. To install the tool independently of the SGN, a stand-alone version was developed that can be installed as a web tool running on a Catalyst server (https:// github/solgenomics/VIGS). Not all plant species are amenable to VIGS, and different species ...
Figure 1. The SGN VIGS Tool. (A) VIGS tool algorithm linear workflow. Arrows leaving from “Print results” box back to previous steps represent options to recalculate results with different parameters changed by the user. (B) Control panel to recalculate the results with new parameters. (C)...
VIGS Stand Alone version of SGN VIGS Tool Developed on a Catalyst framework To add a VIGS dataset, use the following commands: unzip GCA_003287315.1.zip in emacs, replace the string >lcl| with > , if present (otherwise, fastacmd will not work correctly) Copy the dataset to the correct ...
image: breedbase/vigs_tool:v0.01 restart: always 开启docker docker compose up-d#输出[+]Running1/1✔Containervigs_tool Started 添加基因组文件 进入docker,想办法把cds文件扔里面,比如windows打开扔进刚才映射的文件夹$HOME/vigs_sequence_files里
A new tool was recentlyimplemented to improve Virus-Induced Gene Silenc-ing (VIGS) constructs called the SGN VIGS tool.With the growing genomic and phenotypic data inthe database, SGN is now advancing to developnew web-based breeding tools and implement thecode and database structure for other...