bcftools annotate -x INFO does not remove INFO/END when...
$ bcftools annotate --no-version -x INFO/END -Ob -o in.bcf in.vcf $ bcftools index -f in.bcf $ bcftools view --no-version -H -r 1:850204-850204 in.bcf My guess is that, when bcftools annotate -x INFO is used, the command forgets to set the ...