This Window operates in the same range of samples (opposite to Bartlett Window in which the samples are sectioned into two halves) and produces zero outside the sample space. 1.2.4 Hamming window (4)w(n)={0.54−0.46*cos(2πnM−1),0≤n≤M−10,otherwise This Window can be diffe...
Capture with these probe sets enriches unique viral content on average 18-fold, allowing us to assemble genomes that could not be recovered without enrichment, and accurately preserves within-sample diversity. We also use these probe sets to recover genomes from the 2018 Lassa fever outbreak in ...
Sample preparation for RNA seq 20 mg of highly germination-competentV. necatrixspores (> 80% germination efficiency), stored at − 80 ˚C, were thawed and cleaned by centrifugation through a 50% Percoll cushion. Subsequently, three MilliQ water washes were performed to remove Percoll re...
Although EST collections represent an incomplete sample of thetranscriptome, Bayesian probability analysis can be used to infer whether a particular metabolic or signalling pathway is present in an organism. Gileset al. (in press) looked for the presence or absence of EST sequences representingenzymes...
and analyzing relationships between multiple samples based on dissimilarities of all sample pairs. In this study, we systematically investigated these key steps using a series of simulated and real metagenomic datasets, giving special attention to the choice of dissimilarity measures, the length of the...
SeqHound has been developed as an integrated biological sequence, taxonomy, annotation and 3-D structure database system. It provides a high-performance server platform for bioinformatics research in a locally-hosted environment. SeqHound is based on the
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The Setaria genome analysis yielded∼24,000 protein-encoding genes by a manually validated sample sequence approach and∼29,000 by a largely automated analysis of the WGS sequence assembly. The sample sequence approach used a conservative set of criteria for gene calling, thereby minimizing the ...
We are interested in the problem of predicting secondary structure for small sets of homologous RNAs, by incorporating limited comparative sequence information into an RNA folding model. The Sankoff algorithm for simultaneous RNA folding and alignment is
pattern-driven qPMS algorithms have an initial search space of 4lcandidate motifs and verify if each candidate motif is an (l,d) motif. Because of the much smaller initial search space, the pattern-driven qPMS algorithms usually exhibit better time performance than the sample-driven qPMS ...