Ultraconserved enhancer sequences show perfect conservation between human and rodent genomes, suggesting that their functions are highly sensitive to mutation. However, current models of enhancer function do not sufficiently explain this extreme evolutio
MFMD performance was assessed using ChIP-seq data retrieved from the JASPAR site, promoter sequences extracted from the ABS site, and artificially generated synthetic data. The MFMD was evaluated and compared with well-known approaches in the literature, called MEME and Gibbs Motif Sampler, ...
The Tool was implemented as a web-based application composed of four modules: the Extractor module for PET extraction; the Examiner module for analytic evaluation of PET sequence quality; the Mapper module for locating PET sequences in the genome sequences; and the ProjectManager module for data...
The Tool was implemented as a web-based application composed of four modules: the Extractor module for PET extraction; the Examiner module for analytic evaluation of PET sequence quality; the Mapper module for locating PET sequences in the genome sequences; and the ProjectManager module for data...
Spalinskas, R., Van den Bulcke, M., & Milcamps, A. (2013). Efficient retrieval of recombinant sequences of GM plants by cauliflower mosaic virus 35S promoter-based bidirectional LT-RADE. European Food Research and Technology, 237, 1025-1031....
Long terminal repeats (LTRs) represent important parts of LTR retrotransposons and retroviruses found in high copy numbers in a majority of eukaryotic genomes. LTRs contain regulatory sequences essential for the life cycle of the retrotransposon. Previou
The enrichment methods used previously for finding new microsatellite loci in sand flies remain laborious and time consuming; in silico mining, which includes retrieval and screening of microsatellites from large amounts of sequence data from sequence data bases using microsatellite search tools can ...
The DNA template for the mRNA vaccine was a DNA fragment encoding the HA protein of the influenza A virus (A/Puerto Rico/8/1934). DNA templates of the mRNA vaccine were cloned into a plasmid vector with backbone sequence elements (T7 promoter, 5′- and 3′-UTR, 100 nucleotide poly(A...
102 The protein-protein interaction (PPI) analysis was performed with a confidence cutoff of 0.4 using search tool for retrieval of interacting genes/proteins (STRING) database in cytoscape 3.9.1. Samples treated for 48 h were used for GSEA analysis. Batch correction of raw RNA-seq expression ...
Plant promoter sequence United States Patent 7192771 Abstract: Aspects of the invention concern an isolated nucleic acid consisting of the nucleotide sequence of SEQ ID NO:1 operably associated with a heterologous nucleotide sequence.Application Number: 10/363069 ...