However, the final embedding table of Word2vec is stationary, regardless of the upstream and downstream context information of the given word, which may lead to errors regarding the true meaning of the word in
By removing those proteins which are known to be hypothetical (PE = 4) or are of unknown existence (PE = 5), ProtBFN is restricted to model the distribution of proteins that are very likely to exist, meaning that greater confidence can be placed in the sequences it generates. ...
This subsection and the next consider the size of the SequenceNum and AdvertisedWindow fields and the implications of their sizes on TCP's correctness and performance. TCP's SequenceNum field is 32 bits long, and its AdvertisedWindow field is 16 bits long, meaning that TCP has easily satisfied...
The exact meaning of scrambling depends on the type of parallel quasirandom numbers. In general, we seek to randomize the generator matrix for each quasirandom number generator. Specifically, this paper will discuss how to parallelize the Halton sequence via scrambling. The proposed scheme for ...
MSA are completed where homologous sequences are compared in order to perform phylogenetic reconstruction, protein secondary and tertiary structure analysis, and protein function prediction analysis [1]. Biologically good and accurate alignments can have significant meaning, showing relationships and homology...
the Clustering Information (CI) metric58to measure the similarity between landscape sampled trees and real sequence trees based on their topological organization (see Methods and Supplementary Fig.6for more details), with a score of zero meaning identical trees and a score of one indicating ...
(Fig.1c). We take this approximation as the ground truth and search for optimal sequences\(x{\prime}\)to minimize the distance to target\({\tilde{Z}}_{t}\), meaning designing a sequence that self-assembles into a precisely defined structure. We do not validate the end-to-endf(x)...
An enzyme activity is influenced by the external environment. It is important to have an enzyme remain high activity in a specific condition. A usual way is to first determine the optimal condition of an enzyme by either the gradient test or by tertiary structure, and then to use protein eng...
b Same as (a), except the performance metric shown is area under PR curve (AUPRC), instead of AUROC; red points have the same meaning as in (a). c Scatter plot represents the test performance (AUROC and AUPRC) of models colored red in (a, b). d, e ROC and PR curves ...
The physical layer does not care about the meaning of the data. It simply converts the data into bits and places it on the transmission media. Sign in to download full-size image Figure 1.3. The OSI Reference Model's Seven Layers NOTE The data that comes from an upper layer to a ...