Bioinformatics Sequence DatabasesMadhu Bala Priyadarshi
Bioinformatics: Sequence, Structure and Databanks Bioinformatics: sequence, structure and databanks G Bruno - 《Briefings in Bioinformatics》 被引量: 11发表: 2001年 Antibody design using deep learning: from sequence and structure design to affinity maturation Deep learning has achieved impressive results...
The alignments can be updated as new sequences become available in the online public sequence databases. The alignments are available at http://hvdr.bioinf.wits.ac.za/alignments. 展开 关键词: Bioinformatics, Blast, Genbank, Hepatitis B virus, HBV, Sequence alignment ...
Repetitive DNA sequences (repeats) are patterns of nucleic acids that occur in multiple copies throughout the genome1. Both eukaryotic and prokaryotic organisms contain a certain proportion of repeats in the genome2,3,4, particularly mammalians, in which repeats account for 25–50% of their enti...
On-line biodiversity information databases are growing quickly and being integrated into general bioinformatics systems due to the advances of fast gene se... J Lim,J Bhak,HM Oh,... - 《Bmc Bioinformatics》 被引量: 88发表: 2008年 Bioinformatics tools for the study of microbial diversity The ...
doi:10.1093/bioinformatics/btl079BIOINFORMATICS ORIGINAL PAPER Structural bioinformatics Predicting protein interaction sites: binding hot-spots in protein... Motivation: Protein assemblies are currently poorly represented in structural databases and their structural elucidation is a key goal in biology. Here ...
1 评论次数: 0 文档热度: 文档分类: 医学/心理学--待分类 系统标签: sequencegenomesequencesbioinformaticsanalysisgenetics 11CHAPTERHistoricalIntroductionandOverviewThefirstsequencestobecollectedwerethoseofproteins,2DNAsequencedatabases,3Sequenceretrievalfrompublicdatabases,4Sequenceanalysisprograms,5Thedotmatrixordiagram...
(2) Is there a way to reach a consensus for a common nomenclature or taxonomy that is treated equally or cross-referenced faithfully in multiple databases? (3) Is there way to facilitate data-rich systematics in the future? This workshop, combined with the subsequent negative vote on previous...
In the experiment, we use the sequence comparison tool Position-Specific Iterated BLAST (PSI-BLAST) to obtain the PSSM matrix. BLAST is an effective tool for finding locally similar regions between sequences. It is able to compare nucleotide or protein sequences to sequence databases, and calcula...
Understanding the mechanistic basis of any protein’s functions requires understanding the complete set of conformational substates that it can adopt2. For any protein-structure prediction method, the task of predicting ensembles can be considered in two parts: an ideal method would (1) generate conf...