$ seqkit stats *.f{a,q}.gz -a #统计更多信息 $ seqkit stats -j 10 refseq/virual/*.fna.gz #多文件统计(-j:使用多线程) 补充37个工具: 上图参考生信宝典的帖子。 Ref1: https://blog.csdn.net/qazplm12_3/article/details/115535361 Ref2:https://www.jianshu.com/p/471283080bd6?utm_campaig...
R Kortschak,J Snyder,M Maragkakis,... - 《Journal of Open Source Software》 被引量: 7发表: 2014年 A novel algorithm for detecting multiple covariance and clustering of biological sequences Single genetic mutations are always followed by a set of compensatory mutations. Thus, multiple changes ...
change default value of -j/--threads from 2 to 4, which is faster for writting gzip files. seqkit seq: fix writing speed, which was slowed down in v0.12.1. Breaking changes seqkit grep/rmdup/common: consider reverse complement sequence by default for comparing by sequence, add flag -...
盲猜你是要提取fasta里面的chromosome或者contig？那直接grep '^>' your.fasta 不香吗？如果不是的话...
You can increase the value of "-j/--threads" to accelerate processing. @@ -2305,7 +2305,7 @@ Usage ``` text remove duplicated sequences by ID/name/sequence Attentions: Attention: 1. When comparing by sequences, both positive and negative strands are compared. Switch on -P/--only-pos...
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