AI代码解释 meta.skato.results<-skatOMeta(c1,c2,rho=seq(0,1,length=11),burden.wts=function(maf){dbeta(maf,1,25)},SNPInfo=SNPInfo,method="int")format(head(meta.skato.results),digits=2) 上表中值的意义: Pmin指的是参数中的rho;er
files('./',"*.narrowPeak"),function(x){ return(readPeakFile(file.path('./', x))) }) tmp ol <- findOverlapsOfPeaks(tmp[[1]],tmp[[2]]) # 这里选取的是第一个文件和第二个文件,即cell.1_peak_1和cell.2_peak png('overlapVenn.png') makeVennDiagram(ol) dev.off() 也可以使用专业...
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Afterwards, we checked for presence of the UMI sequence (with or without addition of GGG overhang) in the genomic window using R’s fuzzy string matching function (allowing 0, 1 or 2 mismatches). This identification procedure of artifactual UMI reads was also implemented in Python3 to process...
clustering callback option callback = function(hc, mat){ sv = svd(t(mat))$v[,1] dend = reorder(as.dendrogram(hc), wts = sv) as.hclust(dend) } pheatmap(test, clustering_callback = callback) ## Not run: # Same using dendsort package library(dendsort) callback = function(hc,...
that control the binding and function of disordered TFs, including oncogene-dependent sequestration of TFs through long-range interactions and the reactivation of differentiation pathways upon loss of oncogenic stimuli in Ewing sarcoma. Similar content being viewed by others...
[word for word in lst_txt if word not in lst_stopwords] ### back to string txt = " ".join(lst_txt) return txt ## apply function to both text and summaries dtf_train["text_clean"] = dtf_train["text"].apply(lambda x: utils_preprocess_text(x, punkt=True, lower=True, slang=...
载入R包 library(cicero) 载入测试数据 The you can access an example dataset derived from theMouse sci-ATAC-seq Atlaskidney data published inCusanovich and Hill, et. al.: http://atlas.gs.washington.edu/mouse-atac/ 1.1.载...
Information Model I am using (Bert, XLNet ...): T5/BART/mBART/Marian The problem arises when using: the official example scripts: (give details below) my own modified scripts: (give details below) The tasks I am working on is: an officia...
The length ofxdoes not have to be a multiple ofp, so that incomplete repetitions are permitted at the end ofx. Example:sin(pi./[4;2]*(0:159))'specifies a two-channel sinusoid. The second channel has twice the frequency of the first channel. ...