.github feat: extra_payload_autotune flag (#3277) Apr 1, 2025 docs docs: general fixes to docs + expose SHAP params (#3257) Mar 19, 2025 src/scvi fix: changed the tqdm to track with a silent option in all models (#3280 Apr 1, 2025 ...
5 scvi tools train with multi gpus bug P0 #2726 opened Apr 12, 2024 by shanzha9 2 Footer © 2024 GitHub, Inc. Footer navigation Terms Privacy Security Status Docs Contact Manage cookies Do not share my personal information
pip install--quiet git+https://github.com/yoseflab/scvi-tools@master#egg=scvi-tools[tutorials]#!wget --quiet https://github.com/romain-lopez/DestVI-reproducibility/blob/master/lymph_node/deconvolution/ST-LN-compressed.h5ad?raw=true -O ST-LN-compressed.h5ad#!wget --quiet https://github.co...
multivi 1 nan 1 needs benchmark new model Proposals to implement new model 3 on-merge: backport to 1.1.x on-merge: backport to 1.1.x on-merge: backport to 1.2.x on-merge: backport to 1.2.x 3 on-merge: backport to 1.3.x on-merge: backport to 1.3.x Previous...
scvi crashes when trying to train on multiple GPUs (2x Tesla P100-PCIE-16GB) As attempt to work around Lightning-AI/pytorch-lightning#17212 issue strategy='ddp_find_unused_parameters_true' was set. def annotate(adata: AnnData, geneset: D...
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git clonehttps://github.com/scverse/scvi-tools.git conda create -n scvi-pip-p310 python=3.10 conda activate scvi-pip-p310 pip3 install torch torchvision torchaudio --index-urlhttps://download.pytorch.org/whl/cu118 cd scvi-tools pip install . ...
Deep generative models for single-cell omics data. Contribute to E-R/scvi-tools development by creating an account on GitHub.
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