scSpaMet首先用金属同位素偶联抗体对组织进行染色,使用TOF-SIMS成像进行代谢分析,最后使用IMC进行蛋白质组学分析(图1a)。 图1. 代谢组学和蛋白质组学数据整合 scSpaMet框架涵盖三种分析能力:(I)多组学细胞竞争分析,提取细胞类型、细胞代谢组学图谱及其空间位置,并比较局部邻近细胞代谢组学谱变化,以推断代谢物在单细胞...
Source code "src" folder contains customs scripts used: affine transformation "utils.py" contains plotting and io custom functions "spatial" folder contains custom code for spatial interaction functions "scSpaMet" folder contains keras code used for VAE analysis...
scSpaMet __init__.py __pycache__ __init__.cpython-310.pyc __init__.cpython-311.pyc __init__.cpython-36.pyc __init__.cpython-38.pyc __init__.cpython-39.pyc tools _Joint_AE.py _Joint_VAE.py _Joint_XVAE.py _Joint_XVAE_clustering.py __init__.py _...
scSpaMet首先用金属同位素偶联抗体对组织进行染色,使用ToF-SIMS成像进行代谢分析,最后使用IMC进行蛋白质组学分析。 scSpaMet的性能测试 开发团队利用scSpaMet对人类肺癌、扁桃体和子宫内膜组织中的19507、31156和8215个单细胞分别分析了细胞类型和空间代谢组学图谱。 scSpaMet可识别人类肺癌组织中肿瘤和基质区域之间的代谢物...
"src" folder contains customs scripts used: - affine transformation - "utils.py" contains plotting and io custom functions - "spatial" folder contains custom code for spatial interaction functions - "scSpaMet" folder contains keras code used for VAE analysis 109...
Source code "src" folder contains customs scripts used: affine transformation "utils.py" contains plotting and io custom functions "spatial" folder contains custom code for spatial interaction functions "scSpaMet" folder contains keras code used for VAE analysisAbout...