Protein sequences from these species could encompass the query sequences from the rubber tree itself, as well as those from other model species of dicots, monocots, and the original species of the PR-10 protein family. Then, homologs in rubber tree genomes were searched using BLASTp against ...
The name "eudicots" (plural) is used in the APG systems (from APG system, of 1998, to APG IV system, of 2016) for classification of angiosperms. It is applied to a clade, a monophyletic group, which includes most of the (former) dicots. "Tricolpate" is a synonym for the "Eudicot"...
In both monocots and dicots we found YSKn and Y2SKn-DHNs, while Y3SKn- and YnKn-DHNs seem to be restricted to dicots alone (Fig. 2b; Supplementary Figs. S4–S6). Strikingly, the Phi-segment detected in our database corresponds to the N-terminal region of the previously defined GT-...
Similar to clade I, clade II also showed the clear segregation (branches marked in red) of DJ-1 proteins from both monocots and dicots (Fig. 2). In the clade II, the DJ-1 members from monocots showed identity in the range of 42% to 86% while those from dicots showed 46% to 76% ...
To investigate the processes affected by the functional inactivation ofRGA1in rice, the RAPDB database gene name of the DEGs were converted to RGAP database gene name using OryzaExpress ID converter tool (http://bioinf.mind.meiji.ac.jp/OryzaExpress/ID_converter.php). DEGs were subjected to...
the MRCA members may be under-estimated. Only one gene with locus nameCre12.g524000was identified in the green algae speciesC. reinhardtiiand the MRCA among the 15 species was estimated as 1 (Fig. 1E). Since no member was detected in the algae species for theSPSfamily, no MRCA exit ...