.. toctree:: :maxdepth: 4 scgpt.model scgpt.scbank scgpt.tasks scgpt.tokenizer scgpt.utils scgpt.data_collator .. automodule:: scgpt.data_collator :members: :undoc-members: :show-inheritance: scgpt.data_sampler .. automodule:: scgpt.data_sampler :members: :undoc-members: :show-in...
Welcome to the documentation for scGPT, a Python package for single-cell multi-omic data analysis using pretrained foundation models. This package is based on the work of scGPT (GitHub, preprint) and provides a set of functions for data preprocessing, visualization, and model evaluation. Our pa...
This branch is 27 commits ahead of, 6 commits behind bowang-lab/scGPT:main.Folders and filesLatest commit jkobject small updates a82ac2f· Nov 13, 2024 History190 Commits .vscode 🎉 initial commit May 3, 2023 data zero-shot tutorials & dataset links update Dec 4, 2023 ...
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This branch is 2 commits ahead of, 7 commits behind bowang-lab/scGPT:main.Folders and filesLatest commit yanring Update 8ab4d20· Apr 17, 2024 History164 Commits .devcontainer Update Apr 17, 2024 .vscode Update Apr 17, 2024 data zero-shot tutorials & dataset links update Dec 4, 2023 ...
I wander that this scGPT must be need GPU on centos7.9, and i hadn't the GPU, what about CPU to use this scGPT? any advice would be appreciated. Best, hanhuihongkocemir commented Jun 2, 2024 • edited Hi, from my understanding and past experience, if you do not use fast transf...
OceanCodes/scGPT-data-analysis-capsulemaster 1 Branch0 Tags Code Folders and filesLatest commit Jamie-CCM Add files via upload 9d5381c· Dec 6, 2024 History18 Commits code Add files via upload Dec 6, 2024 environment Edited .gitignore, Dockerfile; and changes in 1 other files May 12, ...
git clone https://github.com/pengbaolin/SC-GPT.git cd SC-GPT pip install -r requirements.txt Fetch and unzip the checkpoint wget https://bapengstorage.blob.core.windows.net/fileshare/scgpt.tar.gz tar -xvf scgpt.tar.gz Training export CUDA_VISIBLE_DEVICES=0 python train.py --output_dir...
https://github.com/bowang-lab/scGPT. 建议对技术细节感兴趣的小伙伴请参考文献原文~对于文献整理过程中有翻译不当或错误也欢迎大家在评论区留言指出,互相交流学习! 参考文献: Cui, H., Wang, C., Maan, H. et al. scGPT: toward building a foundation model for single-cell multi-omics using generati...