#h5ad-file;gs-file;cov-file 需要更改相关文件所在路径。此外作者所使用的单细胞数据为小鼠来源的,因此h5ad-species为mouse,相关gs-species也需要相对应的改为mouse。大家需要根据自己所使用的数据样本来源进行更改。 4.2 可视化scDRS结果 代码语言:javascript 代码运行次数:0 运行 AI代码解释 trait:pd.read_csv(f...
sc_readgeoaccess.m . Oct 14, 2024 sc_readh5adfile.m . Dec 5, 2024 sc_readhdf5file.m . Oct 29, 2024 sc_readloomfile.m . Sep 22, 2023 sc_readmtxfile.m . Sep 22, 2023 sc_readparsebio.m Update sc_readparsebio.m May 18, 2024 ...
adata = sc.read_h5ad('mTC.h5ad') sc.pp.highly_variable_genes(adata, n_top_genes=3000) sc.pp.pca(adata, n_comps=50) Subsample by scValue Subsample 10% cells of mTC and return a new AnnData containing the subsample. Alternatively, sketch_size can be specified as an integer, represen...
Seurat to AnnData sceasy::convertFormat(seurat_object, from="seurat", to="anndata", outFile='filename.h5ad') AnnData to Seurat sceasy::convertFormat(h5ad_file, from="anndata", to="seurat", outFile='filename.rds') Seurat to SingleCellExperiment sceasy::convertFormat(seurat_object, from="...
- ReadWriteMany storageClassName: alma-nfs-sc #增加本环境的存储类 resources: requests: storage: 2Gi 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. 17. 18. 19. 20. 21. 22. 23. 24. 25. 26. 27.
>>>adata = sc.read('data/pancreas.h5ad', backup_url = 'https://www.dropbox.com/s/qj1jlm9w10wmt0u/pancreas.h5ad?dl=1') Data in Fig. 3b was curated by 10x Genomics official website, downloaded in the URL: https://support.10xgenomics.com/spatial-gene-expression/datasets ...
The old parameter name is still read. If found, a warning is provided to the user. The old name will be removed in future releases. Updated and improved online documentation of processing blocks at https://gnss-sdr.org/docs/sp-blocks/ Improved documentation of required dependency packages in...
SC92F837X 的 8 Kbytes Flash ROM 能提供查空 BLANK、编程 PROGRAM、校验 VERIFY 和擦除 ERASE 功能,但不提供读取 READ 的功能。此 Flash ROM 和 EEPROM 通常写入前无需进行擦除操作,直接写入数据即可实现新数据的覆盖。 SC92F837X 的 Flash ROM 通过 tDIO、tCK、VDD、VSS 来进行编程,具体连接关系如下: ...
SC91F8312 的 8KB Flash ROM 能提供查空 BLANK、编程 PROGRAM、校验 VERIFY 的功能,但不提供读取 READ 的功能。特别提出,此 Flash 写入前无需执行擦除 ERASE。注意: SC91F8312 的 8KB Flash ROM 最高 4 Byte 地址(地址 1FFCH~1FFFH)存放有 IC 出厂参数,用户在使用过程中需避免对这些地址进行操作,以防...
Adresses issue #2495. Suggested change to allow sc.pp.subsample in backed mode of AnnData, when copy=True in sc.pp.subsample import scanpy as sc adata = sc.read_h5ad("matrix/scatlas.h5ad", backed=...