Katz Y, Wang ET, Silterra J, Schwartz S, Wong B, Mesirov JP, Airoldi EM, Burge CB. 2013. Sashimi plots: quantitative visualization of RNA sequencing read alignments. arXiv preprint arXiv:13063466.Katz,Y. et al. (2013) Sashimi plots: quantitative visualization of RNA sequenc- ing read...
rmats2sashimiplot produces a sashimiplot visualization ofrMATSoutput. rmats2sashimiplot can also produce plots using an annotation file and genomic coordinates. The plotting backend isMISO. Table of contents Dependencies Python 2.7 (Python 3 can be used after running2to3.sh) ...
rmats2sashimiplot produces a sashimiplot visualization of rMATS output. rmats2sashimiplot can also produce plots using an annotation file and genomic coordinates. The plotting backend is MISO.Table of contentsDependencies Install Usage Examples SAM files with rMATS event BAM files with coordinate ...
Here is a visualization of which reads rMATS counts as supporting which isoformshttps://github.com/Xinglab/rmats-turbo#output In your example the plot of Shank3 control-2 is interesting to discuss because it differs from rMATS for both inclusion and skipping counts. It has inclusion junction co...
Garrido-Martín, D., Palumbo, E., Guigó, R., & Breschi, A. (2018). ggsashimi: Sashimi plot revised for browser-and annotation-independent splicing visualization.PLoS computational biology, 14(8), e1006360. Releases17 Version 1.1.5Latest ...