Source data are provided with this paper.Code availability Codes were written in Python 3.11.3 and R version 4.2.3 (15 March 2023) and are available via GitHub at https://github.com/KleistLab/VASIL and via Zenodo at https://doi.org/10.5281/zenodo.8349295 (ref. 60). Simulations were ...
The source data for subpanel b is available in the Source Data file. Full size image Fig. 7: A potential transmission event of white-tailed deer-adapted AY.103 SARS-CoV-2 from white-tailed deer to humans in North Carolina (NC). a The maximum clade credibility tree illustrating the ...
The genome of SARS CoV is that of a typical coronavirus. The viral genomic RNA has at least 14open reading frames(ORFs) (Figure 1). The genome codes for 16 nonstructural proteins (nsp1–16), 5structural proteins, and 7accessory proteins. The genomic RNA encoding the replicase gene functions...
Crystallographic coordinates and structure factors have been deposited in the Protein Data Bank (PDB) with accession codes 8A4Q (Mpro co-crystalized with 13b-H) and 8A4T (Mpro co-crystalized with 13b-K). CCDC 2113703 contains the supplementary crystallographic data for compound 12. Authors will...
Finally, laboratory results from 38 different laboratory measurements were classified into 62 laboratory test abnormalities, defined by being above or below the corresponding reference ranges, on the basis of the recorded Logical Observation Identifiers Names and Codes. Of the high-dimensional variables ...
Samples were collected anonymously and traced with unique internal codes from the post diagnostic phase. Sequencing was performed both for informational purposes for clinicians with patients in care and in the broader context of territorial monitoring of SARS-CoV-2 circulation. Requirements for sample ...
Structure results in this report are based on work performed at the GM/CA beamline at the Advanced Photon Source of Argonne National Laboratory, which is funded by the National Cancer Institute (ACB-12002) and the National Institute of General Medical Sciences (AGM-12006, P30GM138396). This ...
Step 2. Systematic data coding - The information relevant to the research questions was highlighted and labelled with codes by two independent data coders (DS and SD), who were blinded to each other’s coding decisions. Step 3. Generating initial themes from coded and collated data - The manu...
Source codes for scRNA-seq and Ab repertoire analyses This paper https://github.com/EraslanBas/Sars_Cov2_Antibodies Antibody sequences and scRNA-seq count matrices This paper Single Cell Portal of the Broad Institute (SARS-CoV-2 Antibodies, Accession #SCP1317; https://singlecell.broadinstitute...
Accept all cookies Abstract Several indices can predict the long-term fate of emerging infectious diseases and the effect of their containment measures, including a variety of reproduction numbers (e.g.R0). Other indices evaluate the potential for transient increases of epidemics eventually doomed to...